Gene Information

Name : ssaQ (SC1439)
Accession : YP_216426.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 1535396 - 1536364 bp
Length : 969 bp
Strand : +
Note : IPR001172: Flagellar motor switch FliN protein

DNA sequence : 
ATGTTAAGAATAGCGAATGAAGAGCGTCCGTGGGTGGAGATACTTCCAACGCAAGGCGCTACCATTGGTGAGCTGACATT
GAGTATGCAACAATATCCAGTACAGCAAGGGACATTATTTACCATAAATTATCATAATGAGCTGGGTAGGGTGTGGATTG
CAGAACAATGCTGGCAGCGCTGGTGTGAAGGGCTAATTGGCACCGCTAATCGATCGGCTATCGATCCTGAATTGCTATAT
GGAATAGCTGAATGGGGGCTGGCGCCGTTATTGCAAGCCAGTGATGCCACCCTCTGTCAGAACGAACCGCCAACATCCTG
CAGTAATCTACCACATCAGCTAGCGTTGCATATTAAATGGACAGTTGAAGAACATGAGTTCCATAGCATTATTTTTACAT
GGCCAACGGGTTTTTTGCGCAATATAGTCGGAGAGCTTTCTGCTGAGCGACAACAGATTTATCCTGCTCCTCCTGTAGTA
GTCCCTGTATATTTAGGCTGGTGCCAGCTTACGTTAATTGAACTTGAGTCTATCGAAATCGGCATGGGCGTTCGGATTCA
TTGCTTTGGCGACATCAGACTCGGTTTTTTTGCTATTCAACTACCTGGGGGGATCTACTCGAGGGTGTTGCTGACAGAGG
ATAACACGATGAAATTTGATGAATTAGTCCAGGATATCGAAACGCTACTTGCGTCAGGGAGTCCAATGTCAAAGAGTGAC
GGAACATCTTCAGTAGAACTTGAGCAGATACCACAACAGGTGCTCTTTGAGATCGGACGTGCGAGTCTGGAAATTGGACA
ATTACGACAACTTAAAACGGGGGACGTTTTGCCTGTAGGTGGATGTTTTGCGCCAGAGGTGACGATAAGAGTAAATGACC
GTATTATTGGGCAAGGTGAGTTGATTGCCTGTGGCAATGAATTTATGGTGCGTATTACACGTTGGTATCTTTGCAAAAAT
ACAGCGTAA

Protein sequence : 
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIDPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYLGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYSRVLLTEDNTMKFDELVQDIETLLASGSPMSKSD
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaQ YP_216426.1 type III secretion system protein Virulence SPI-2 Protein 1e-143 100
ssaQ NP_460383.1 type III secretion system protein Virulence SPI-2 Protein 9e-143 99
ssaQ NP_456110.1 putative type III secretion protein Virulence SPI-2 Protein 6e-143 99
ssaQ NP_805089.1 type III secretion system protein Virulence SPI-2 Protein 6e-143 99
ssaQ CAA70540.1 secretion system apparatus Virulence SPI-2 Protein 4e-98 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaQ YP_216426.1 type III secretion system protein VFG0518 Protein 4e-143 99