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Name : Psyr_1040 (Psyr_1040) Accession : YP_234134.1 Strain : Pseudomonas syringae B728a Genome accession: NC_007005 Putative virulence/resistance : Virulence Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 1175474 - 1175977 bp Length : 504 bp Strand : - Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate DNA sequence : ATGCCCGTCGCCCACTCCGCTCTCAATCACACTGTCGAAGGCCTGTACAGGGCACACAACGCCTGGCTGACGACCTGGTT GCGACGCAGACTCGGCTGCCCGCACAGCGCGGCGGACCTGGCGCAGGACACCTTTATCAAGGTGCTGGGCGCACGCGATA CAGCGCAAATCGTCGAGCCGCGAGCCTTTCTGACGACGATTGCCAAGCGTGTGCTGTGCAATCACTACCGGCGTCAGGAC CTGGAGCATGCCTACTATCAGGCACTGGCCGAACTGCCGGAGCGCGTGGCGCCTTCGGAAGAAGAGCGGGCGATCATTCT CGAAACCCTGGTCGAACTCGATCAACTGCTGGACGGCCTGCCAGCACTGGTCAAGCGGGCGTTTCTGCTGTCGCAGGTCG ACGGCTTGAGCCATGGCCGGATCGCTGCCGAACTGGGTATCTCCATCGCCACGGTCAAGCGTCATCTGCACAAGGCCGCC CTGCGCTGCTATTTCGCCCTATGA Protein sequence : MPVAHSALNHTVEGLYRAHNAWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTAQIVEPRAFLTTIAKRVLCNHYRRQD LEHAYYQALAELPERVAPSEEERAIILETLVELDQLLDGLPALVKRAFLLSQVDGLSHGRIAAELGISIATVKRHLHKAA LRCYFAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 9e-33 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Psyr_1040 | YP_234134.1 | RNA polymerase sigma factor | VFG1049 | Protein | 4e-33 | 50 |
