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Name : secD (NTHI0346) Accession : YP_247960.1 Strain : Haemophilus influenzae 86-028NP Genome accession: NC_007146 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 331591 - 333441 bp Length : 1851 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGTTAAACCGTTATCCATTATGGAAGAATTTGATGGTTATTTTTATTGTGGCCATCGGGATTTTATATTCTCTTCCAAA TATTTATGGTGAAGATCCTGCGGTGCAAATTTCCGGTACGCGCGGTCAAGAAGCAAATACTAGCGTGCTTGGACAAGTTC AAGATGTGCTTAAAACCAATAATCTTCCAACCAAATCTATCGTGCTTGAGAATGGCTCAATTCTAGCTCGTTTTACTAAT ACCGATGATCAACTTCTTGCTAAAGATAAAATTGCTGAACGTCTTGGCAATAATTACACCACCGCATTAAATCTTGCTCC AGCCACTCCAGCTTGGTTAAGTATGTTTGGTGCGAATCCTATGAAATGGGGATTAGACTTACGCGGTGGGGTTCGTTTTT TGATGGAAGTCGATATGAATGCCGCACTTGTAAAACGCCAAGAGCAATTACAAGACAGTTTGCGTGGCGAACTTCGCAAA GAAAAAATTCAATATACTGCCATTAAAAATACAGAGCATTTTGGTACGTTGATAACCTTAGCTAATGTGAGCCAGCGTGC TAAAGCTGAGCGAATTATTCGCCAATTACATCCAACATTAGACATTACTGAGCCTGATGCTGATAGTATTAATTTAGGGC TATCTACTGCAGCATTAAATGAAGCACGCGACTTAGCCATTGAGCAAAACTTAACGATTTTACGTAAACGTGTTGCTGAA TTAGGTGTTGCAGAAGCGGTAATTCAACGTCAAGGTGCTGAACGTATTGTGATTGAATTACCAGGTGTTCAAGACACTGC ACGCGCAAAAGAAATTTTAGGGGCAACGGCAACACTTGAGTTTCGTATCGTAAATCAAAATGTTACAGCTGATGCTATTT CTCGTAATATGTTACCAGCTGATTCGGAAGTTAAATATGATCGCCAAGGGCATCCTGTTGCATTATTTAAACGTGCCGTA TTAGGTGGGGAGCATATCATTAATTCAAGCTCTGGTTTAGATCAGCATTCAAGCACGCCGCAAGTGAGTGTAACCTTGGA TAGCGAAGGTGGCGAGATTATGTCTCAGACCACTAAAAAATATTACAAAAAACCAATGGCAACGCTTTATGTTGAATATA AAGATAATGGCAAAAAAGATGAAAATGGCAAAACCATTTTAGAAAAGCATGAAGAAGTTATTAATGTTGCAACAATTCAA GGTCGTTTTGGTTCTAATTTCCAAATTACTGGTGTTGATAGTATTGCCGAAGCACATAATCTTTCTACCTTGTTGAAATC TGGCGCATTAATTGCACCAATTCAAATTGTTGAAGAACGCACAATTGGCCCATCATTAGGTGCACAAAACGTAGAGCAAG GGATTAATGCGAGTCTTTGGGGATTAGTTGCTGTTATTGCCTTTATGTTGTTTTACTACAAAATGTTTGGTGTGATTGCA AGTTTTGCACTTGTTATTAATATCGTATTACTTGTGGGATTAATGTCTATTTTACCCGGTGCGACACTTTCAATGCCGGG TATTGCGGGTATCGTTTTAACTTTAGGTATGTCAGTAGATGCGAATGTATTGATTTTTGAACGTATTAAAGAAGAAATTC GTAATGGTCGTTCAATTCAGCAAGCCATTAATGAAGGTTATAACGGTGCATTTACTTCTATTTTTGATGCTAACTTAACC ACAATCTTAACCGCAATTATTCTATACGCGGTAGGAACAGGCCCAATTCAAGGTTTTGCGATTACGCTTTCACTTGGTGT TGCGATTTCTATGTTTACCGCGATTACTGGAACTCGCGCATTAGTTAATGCCCTTTACGGCGGCAAACAACTTAAAAAAT TATTAATTTAG Protein sequence : MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQEANTSVLGQVQDVLKTNNLPTKSIVLENGSILARFTN TDDQLLAKDKIAERLGNNYTTALNLAPATPAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRK EKIQYTAIKNTEHFGTLITLANVSQRAKAERIIRQLHPTLDITEPDADSINLGLSTAALNEARDLAIEQNLTILRKRVAE LGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAV LGGEHIINSSSGLDQHSSTPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVATIQ GRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKMFGVIA SFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLT TILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKKLLI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 8e-117 | 45 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-117 | 45 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-117 | 45 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-117 | 45 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-117 | 45 |
