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Name : secD (Psyc_1277) Accession : YP_264561.1 Strain : Psychrobacter arcticus 273-4 Genome accession: NC_007204 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1538715 - 1540592 bp Length : 1878 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCAATATCCCGCTTGGAAATACCTACTCATCACCGTCGTACTAATCATTGCCGGTCTATACGCTGCTCCTAACTTATA TCCTGACGAACCTGCCGTACAGATTACCAGTGCCGCAGCAGGCACACAGTTGTCTGATGGCATCTTGACTCAGTCGCAAG ATTTGTTGAAAGAAGCTGGCTTGAACTACCATGATGGTACGTTTAAAGGCAACAGTGCATTAGTACGTCTTGATAACCCA GTCGATCAGCTCAAGGCTCAGGAAGTATTGAGAAAGAACTTGGGCGATAACTATGTGGTCGCACTGAACTTAGCGCAGAC AACGCCGCAATGGTTGCGTGATATCGGCGCAAAGCCCATGAAACTTGGTCTTGATTTGCGTGGTGGTGTCCGTTTTGTGT TAGAAGTTGACATGGATAAGGCACTCGAACAACGTCTGACCAGTGCCAGTCGTGATATTCGACGAGATCTAAGAGCTGAG CGTATTGCTGTTAAAGGTATCAAAAACGACAAGCGCACTGTGGTATTGCATTTTTCTGATACAGACAATCGTAACCGTGC ACAAAACGTGTTGCAAAGCTCAATAGGTAATACTTTTACGCTGCAATCTTCTATCGATGAGCAAGGTCCTGCGCTAATTT TGGCGTATAACGATGCCACTTTAGATGAAATCAATAGCTATGCGGTCAATCAGAACCTGAATACCCTACGCAATCGTATT GCTGAACTTGGGGTAACAGAAGCCTTGGTACAATCACAAGGTGCTAGCCGTATCGTCGTTGAGCTGCCAGGTGTACAAGA TACGGCTGAGGCAAAACGTGTCCTTGGTCGTACAGCCAACCTTGAGTTCCGTATGGTCGCTGAAGGTGCCGAAAATTATA CGGGCGGTATACCCCCTGCCGGCACTGAAGCTTTCCCATTTGAAACGCTTGATGGTCCGCCCGTATTGCTAGAGCGTCAA GCGATCGTCACTGGTGATAAAGTCACCAATGCTCAGACAGGCATTGATGAAAGTGGCTCACCTGAGGTTAGTATCACCTT AGACAACGCTGGTGGCAAACTGATGCAAAATGCTACCCGTACCGCAGTTGGCAAACAAATGGCTGTAGTGTTCATTGAAA ACAAGCAAAGAGTCACTTATAAAGAAGACTCAGCCACTGGCGAGACCGTCGAAGTACGGACGCCTTATGCTGAAACAAAA GTCATTAACCGTGCCAATATCCAAGCAGTCCTTGGCTCATCATTCCGTATTACCGGTCTTGATAGTAGTGCTGAAGCTGC TGAGCTTGCGCTGTTACTACGCTCAGGCGCATTAGCGGCACCGATGTATTTTGTTGAAGAGCGCACCATTGGTCCATCAC TGGGTCAGGAAAATATCGATAAAGGATTATTCTCTACGCAGGTAGGTTATTTATTAGTCTTTGCGTTTATGATTATCTTC TATCGCCTGTTTGGTGTGATTGCCAATATTGCTCTAGCAGTGAACGTTATTATCATCATCTCTATTATGTCCATCTTAGG CTCATCACTGACGCTACCTGGTATCGCTGGTATTGTATTAACCATTGGTATGGCGGTCGATGCCAACGTCCTAATTTTTG AGCGTATCCGTGAAGAGCTGGCTAATGGAGTGAGACCGAAATCGGCTATCGTAGCAGGTTTTGATCGTGCTTATAGTAGT ATTTTCGATGCCAATATCACAACATTACTCGTCGCTTTTATCTTATTTTCGATTGGTACGGGTCCGATTAAAGGCTTTGC GATTACTTTAGCAATTGGTATCGTCAGCTCGCTGTTTACTGCAATTTTGGTAACCCGTGCACTGATACAAATTGCTTATG GTAAGCGTAAATCTATCAAACGTCTGAGCATCGGTTAG Protein sequence : MQYPAWKYLLITVVLIIAGLYAAPNLYPDEPAVQITSAAAGTQLSDGILTQSQDLLKEAGLNYHDGTFKGNSALVRLDNP VDQLKAQEVLRKNLGDNYVVALNLAQTTPQWLRDIGAKPMKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAE RIAVKGIKNDKRTVVLHFSDTDNRNRAQNVLQSSIGNTFTLQSSIDEQGPALILAYNDATLDEINSYAVNQNLNTLRNRI AELGVTEALVQSQGASRIVVELPGVQDTAEAKRVLGRTANLEFRMVAEGAENYTGGIPPAGTEAFPFETLDGPPVLLERQ AIVTGDKVTNAQTGIDESGSPEVSITLDNAGGKLMQNATRTAVGKQMAVVFIENKQRVTYKEDSATGETVEVRTPYAETK VINRANIQAVLGSSFRITGLDSSAEAAELALLLRSGALAAPMYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFMIIF YRLFGVIANIALAVNVIIIISIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREELANGVRPKSAIVAGFDRAYSS IFDANITTLLVAFILFSIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRKSIKRLSIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-134 | 52 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-134 | 52 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-134 | 52 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-134 | 52 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-135 | 52 |
