|
Name : rpoB (SAR11_1123) Accession : YP_266530.1 Strain : Candidatus Pelagibacter ubique HTCC1062 Genome accession: NC_007205 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1078532 - 1082623 bp Length : 4092 bp Strand : - Note : - DNA sequence : ATGCAATTATCTTTTACTCAAAAGAAAAATGTAAGAAAAAGCTTTGGAAAGCTTGCGGAAACTTTATCTATTCCAAATTT AATTGAAGTTCAAAAAAATTCATACAAACAACTTACTGATTTTGACAGTGAAGCTGGAGATTTATCAAAAGGATTTGATA GAGTTTTTAAAAGTATTTTTCCAATAGAAGATTTAAATGATAAAGCAACATTAGAATATGTTTCTTATAGACTTGAAAAA CCAAAATTTGATACTGAAGAATGTATTCAAAGAGGATTATCTTTTACGTCAGCGTTAAAATGTACTTTGAGATTGGTTGT TTACGAAATTGACCAAGAAAACAATACTAAAGATATTTTATCTGCCAAAGAGCAGGAAGTTTATATGGGTGAAGTGCCTA TGATGACTGATAGTGGAACTTTTATAACAAACGGTGTTCAAAGAGTTGTTGTAAACCAAATGCACAGAAGTCCGGGTGTT TTCTTTGATCATGATAAAGGTAAATCACATGCAAGTGGTAAATTATTATTTAATTGTAGAGTTATTCCTAACAGAGGATC TTGGTTAGATTTAGAATACGATGTTAAAGATTTTTTATATTTTAAGATTGATAGAAAGAAAAAAATATTTGCTTCAACTC TTTTGATGGCTTTAGGTTTAACTAAATCAGAAATTGCTGATGAGTTTTATGATAAAGACACTTATTCGTTTGATGCAAAA ACAGGTAAATGGAAAACAAAATTTAATCCTGAAAACTACAAAGCAAAAAATTTTTCTGAAGAAGTTACTGATGCTAAAAC AGGAAATGTTGTAATTAAGCTTGGTGATAAAATTAATTTTTTAACTGCTAAAAAGTTAGCTTCAGATGGGCTTAAAGACA TTCTTGTATCTCAAGAGTCTTTGATTGGAAAATATTTGCATAATGAAGTTAAAGTTAGTGATGATGAAGAAGAAGGTACT TTTGGAATAGGTACAGAGTTAAATGACACTATTATTAAGCAAATTTTAGAGGCTAATATTAGCTCAATTGAAATTTCTAT TACTAATTCTATTAATAAAGGACCTTATTTATTAACAACAATTTTAAATGATAAAAATAATTCAAAAAATGATGCAATTA CTGAAATTTACAAGGTTTTAAGACCAGGTGAACCACCAACAGTTGAGATTGCTACACAGATATTTAACAATCTGTTCTTT AGTTCAGATAGATACGACCTTTCTGATGTTGGTAGAGTTAAGATGAACTCGAGACTGAACCTTGAGTGTTCTGATAAAAT TACAATTTTAAGAAATGACGACATAATTGCTATCGTTCATAAAATGTTAGATTTAAGAGATGGTAAAGATGAAGTTGATG ATATTGATCACTTAGGTAACAGAAGAGTAAGATCTGTTGGTGAACTTGTTGAAAACCAAGCGCGTATTGGTGTTTACAGA ATGGAAAGAGCGATTAAAGAAAAAATGACAACTCTTGATATTGAGTCAGCAATGCCACAAGATTTGATTAATGCAAAACC ATTAACAGTTTCTCTTAAAGATTTTTTTGTAAGTTCACAACTTTCTCAATTTATGGATCAAACAAATCCATTATCAGAAA TTACACACAAAAGAAGAGTTTCAGCTTTAGGACCAGGTGGGTTAACTAGAGAAAGAGCTGGGTTTGAAGTACGTGACGTT CATCCAACTCACTACGGAAGAATTTGTCCAATTGAAACACCTGAAGGACCGAACATTGGTTTGATTAATAGTTTATCTAC TTATGCTAAAATTAATAAGTATGGTTTTATTGAAAGTCCTTATAAAAAAGTTCTAAACGGTATAGTTCAAGATAAAGTTG AATATCTTTCAGCGATGGAAGAAACAAAATATACAATTGCTCAAGCTAATGCAAAAATAGATAAATCTGGAAAAATTTTA GAAGAACTTGTTCCTTGTAGGGAAAATTTAAACTTCGTTTTATCAAATCCAAGTAAAATTGATTATATTGATGTTTCACC TAAACAGTTAGTTTCTGTTGCAGCCTCTCTAATCCCTTTCTTAGAAAATGATGATGCGAACAGAGCTCTAATGGGATCTA ACATGATGAGACAAGCGGTTCCTTTATTAAAACCAGAGTCTCCTTTAGTTGGTACCGGAATTGAAAGTGATGTTGCTCTT GATTCAGGTGTAACTATTGTTGCTAGTCGTGATGGTACAGTTGATAAAATTGACGGAAAAAGAATTGTAATCAAAGCAAC TGAAGAAACGGATTTCACTAAATCAGGTGTGGATATTTATAACCTGCAAAAATTTAAAAGATCAAACCAAAATACATGTA TTAACCAAAAACCACTTGTTAGAGTAGGTGATAAAGTTAAATCAGGAGATATTATTGCTGACGGACCATCTACTAAACTA GGTGAGTTAGCACTCGGAAAAAATGTGACAGTAGCATTTATGCCTTGGCAAGGTTACAATTTTGAAGATTCTATTTTAAT TTCAGAAAGATGTGTTACAGACGATGTATTTACATCAGTTCATATTGTTGAATATGAAGTTATGGCTAGAGATACAAAAT TGGGTGAAGAAGAAATTACTAGAGATATTCCAAATGTAAATGAAGAAGCCCTAAAAAACCTTGATGAATCTGGAATTGTT TATATTGGCGCTGAAGTAAAAGCTGGTGATATATTAGTTGGTAAAGTTACACCTAAAGGAGATTCAGCATCTGGACCTGA GGAAAAATTATTAAGATCTATTTTTGGTGAAAAAGCAATCGATGTAACTGACACATCATTAAAAATGTCTAGAGGAAGCA GTGGAACGGTTGTTGATGTTAGAGTATTTAATAGACATGGTATAGAAAAAGATGAAAGATCTATTACAATTGAAAGAGCA GAAATTGATACTGTTCAACAAGACAAAATTGTAGAGGAAGAAATTCTAGAAAGAAGCATAAAACAAAGAGCTAATCAAAT TTTATCAGGAGCTTCTTTAACTAAAAAAATAAAAGATTTAGACGAAGGTACCAAACTTGATCTTGAGATAATTAATAAAA TTAATATTAACGATGTATTCAAGATAACAGTAGGCAATGTTAATGATGAAGCGAGTATTGCTCAATTAAAAGATCAATAC AATCAAGCAAAACAAGATATTCAAGAAAGATTTGAAGATAAGGTTTTAAAAATTAGAAGTGGCGATGATTTATTACCAAG TGTTATGAAAATGGTAAAAGTTTTCGTTGCGATTAAAAGAAGATTAAGACCAGGTGATAAGATGTCAGGTAGACACGGAA ACAAGGGTGTAGTCAGTAAAATTGTCCCTGTTGAAGATATGCCTTATAGAGAAGATGGCAGACCTGTTGACATTGTATTA AATCCACTTGGAGTTCCAAGTCGTATGAACGTAGGTCAAATCTTAGAAACTCACCTTGGTTGGGCTTGTAAAGAATTTGG TGAAGAAGTTAAAAGATTAGTTAATGAAAATAATAAAAAATTTGAAAAAACTGAAAAAATTTCATCATTCCTAAAATCTG TTTATGGTAAAGAAGTGTTTGATGGTGGAATTGAAAAATTAAACAAAACTGAATTTTCAGATTTATGTGAAAACTTACAA AATGGTATAGCTATTTCAACTCCAGTATTTGATGGAGCTAAAGAAAAAGATGTTTCTGAAATGCTTGAGTTAGCAAAACT ACCTACTTCAGGTCAAACTAATTTATGGGATGGTAGAACAGGTGAAATGTTTGATAGACCTGTAACCGTTGGTATTATTT ATATGCTTAAACTGCATCACTTGGTTGAGGATAAAATTCACGCAAGATCTACTGGTCCTTATAGTCTTGTTACACAGCAG CCATTGGGTGGTAAAGCACAACTTGGTGGACAAAGATTTGGTGAAATGGAAGTGTGGGCTCTTGAAGCGTATGGAGCTTC GTACACATTACAAGAAATTTTAACAGTTAAGTCAGATGACGTTGCTGGAAGAGTTAAAGTTTACGAAACGATTGTTAAAG GTGAAGAAAATTTTGAGTCTGGAATTCCAGAGTCATTCAACGTTCTAGTTAAAGAAATTAAATCATTAGCACTAAACATA GAGTTAAATTAA Protein sequence : MQLSFTQKKNVRKSFGKLAETLSIPNLIEVQKNSYKQLTDFDSEAGDLSKGFDRVFKSIFPIEDLNDKATLEYVSYRLEK PKFDTEECIQRGLSFTSALKCTLRLVVYEIDQENNTKDILSAKEQEVYMGEVPMMTDSGTFITNGVQRVVVNQMHRSPGV FFDHDKGKSHASGKLLFNCRVIPNRGSWLDLEYDVKDFLYFKIDRKKKIFASTLLMALGLTKSEIADEFYDKDTYSFDAK TGKWKTKFNPENYKAKNFSEEVTDAKTGNVVIKLGDKINFLTAKKLASDGLKDILVSQESLIGKYLHNEVKVSDDEEEGT FGIGTELNDTIIKQILEANISSIEISITNSINKGPYLLTTILNDKNNSKNDAITEIYKVLRPGEPPTVEIATQIFNNLFF SSDRYDLSDVGRVKMNSRLNLECSDKITILRNDDIIAIVHKMLDLRDGKDEVDDIDHLGNRRVRSVGELVENQARIGVYR MERAIKEKMTTLDIESAMPQDLINAKPLTVSLKDFFVSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDV HPTHYGRICPIETPEGPNIGLINSLSTYAKINKYGFIESPYKKVLNGIVQDKVEYLSAMEETKYTIAQANAKIDKSGKIL EELVPCRENLNFVLSNPSKIDYIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLLKPESPLVGTGIESDVAL DSGVTIVASRDGTVDKIDGKRIVIKATEETDFTKSGVDIYNLQKFKRSNQNTCINQKPLVRVGDKVKSGDIIADGPSTKL GELALGKNVTVAFMPWQGYNFEDSILISERCVTDDVFTSVHIVEYEVMARDTKLGEEEITRDIPNVNEEALKNLDESGIV YIGAEVKAGDILVGKVTPKGDSASGPEEKLLRSIFGEKAIDVTDTSLKMSRGSSGTVVDVRVFNRHGIEKDERSITIERA EIDTVQQDKIVEEEILERSIKQRANQILSGASLTKKIKDLDEGTKLDLEIINKININDVFKITVGNVNDEASIAQLKDQY NQAKQDIQERFEDKVLKIRSGDDLLPSVMKMVKVFVAIKRRLRPGDKMSGRHGNKGVVSKIVPVEDMPYREDGRPVDIVL NPLGVPSRMNVGQILETHLGWACKEFGEEVKRLVNENNKKFEKTEKISSFLKSVYGKEVFDGGIEKLNKTEFSDLCENLQ NGIAISTPVFDGAKEKDVSEMLELAKLPTSGQTNLWDGRTGEMFDRPVTVGIIYMLKLHHLVEDKIHARSTGPYSLVTQQ PLGGKAQLGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVAGRVKVYETIVKGEENFESGIPESFNVLVKEIKSLALNI ELN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 54 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | CP001918.1.gene250.p | Protein | 0.0 | 55 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | CP000034.1.gene3741. | Protein | 0.0 | 55 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | CP001138.1.gene4362. | Protein | 0.0 | 55 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | NC_002695.1.914942.p | Protein | 0.0 | 55 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | CP000647.1.gene4402. | Protein | 0.0 | 55 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | CP000675.2.gene392.p | Protein | 0.0 | 55 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | CP004022.1.gene2794. | Protein | 0.0 | 54 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | NC_009085.4918494.p0 | Protein | 0.0 | 54 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | NC_010400.5987325.p0 | Protein | 0.0 | 54 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | NC_010410.6003841.p0 | Protein | 0.0 | 54 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | NC_011586.7046027.p0 | Protein | 0.0 | 54 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | NC_010611.6233925.p0 | Protein | 0.0 | 54 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | NC_011595.7060572.p0 | Protein | 0.0 | 54 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | NC_002516.2.881699.p | Protein | 0.0 | 54 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | NC_011035.1.6448762. | Protein | 0.0 | 53 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | NC_008702.1.4609796. | Protein | 0.0 | 53 |
| rpoB | YP_266530.1 | DNA-directed RNA polymerase | CP002695.1.gene18.p0 | Protein | 0.0 | 53 |
