|
Name : secD (Daro_3280) Accession : YP_286480.1 Strain : Dechloromonas aromatica RCB Genome accession: NC_007298 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3530650 - 3532527 bp Length : 1878 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAATCGCTACCCTCTCTGGAAGTACATCACCATCGCTATCGCGCTGGTCATGGGCTTCGTCTACACCCTGCCCAATTT CTTCGGCGAATCACCGGCCGTGCAGGTTTCCAGCGCCAAGGCCACGATCAAGGTCGATGAAAAGGCCAAGGCCCGTGTCG AAGATTCCCTGAAGGCCGCCGGCATCACGCACGATGGCATCCAGCTCGACTTCAACGGCGTCAAGACCCGTTTCAAGGAT ACCGACACCCAGCTGAAGGCCAAGGATGCACTGGAAAAGGCCTTCAACCCGGACGCAGCCGATCCGCAGTACGTCGTTGC CCTTAACCTGCTGGCCGCCTCGCCGCAATGGCTGACCTCGCTGCACGCGCTGCCGATGTACCTCGGCCTCGACCTGCGCG GCGGTGTGCACTTCCTGCTGCAGGTAGACATGAAGGGGGCGTTGACCAAGCGCCTCGATTCGACCTCGGCCGACCTGCGC ACCGTGATGCGCGACAAGAATCTGCGCCACGGCGGCGTAAACCGCGAAGGCGAGCGCATCATCATCAAGTTCCGCGATGC CGAAACGCAAAACAAGGCCCGCATCGCCATTTCCGACAGCCAGCCCGACCTGCTGCTGACCGATGCTGGCGATGCCGCCG AGCCGCGCCTGATCGCCACGCTGAAGCCGCAAGCCCAGCAGAAGATCGGCGAATTTGCGCTGAAGCAGAACATCACCACG CTGCACAACCGGATCAACGAACTCGGCGTCGCCGAACCGGTGATCCAGCAACAAGGCGCCGACCGCATCGTCGTCCAGTT GCCTGGCGTGCAGGACACGGCCAAGGCCAAGGACATTCTGGGTCGTACCGCGACCCTGGAAATCCGCATGGTCGACGACT CGACAGGCGCGCTCGACGCCGCGCTGGCCGGCAATCCGCCGTTCGGTACCGAGGTCTACAACGAGCGCGGCGGCCAGCCG CTGCTGGTCAAGAAGCAGGTGGTGCTGACCGGCGACCGCCTGACCGATGCCCAACCCGGCTTCGACAACCAGACCCAGGA GGCTGCGGTCCACCTGACGCTCGACGCCGCCGGCGCCCGCATTTTCAAGGACATCACCCGCGAAAACGTCGGCAAGCGCA TGGCCATCCTGCTCATCGAAAAGGGCAAGGGCGAAGTAGTGACCGCGCCGGTCATCCGTACCGAAATCGGTGGCGGCCGC GTGCAGATTTCCGGCCGCATGACCACCACGGAAGCCAACGATACCGCCCTGCTGTTGCGTGCCGGCTCGCTGGCCGCCCC GATGGAGATCATCGAGGAACGCACCATCGGCCCATCCCTGGGTGCCGAAAACATCCAGAAGGGCTTCCATTCGACGATGT GGGGCTTTGCCGCGATCGCCGTGTTCATGATCATCTACTACCAGATGTTCGGTGTCGTTTCGGTGCTGGCGCTGGCTTCC AACCTGCTGTTCCTGGTCGCCATCCTGTCGCTGCTGCAGGCGACGCTGACCCTGCCCGGCATCGCGGCTATCGCGCTAAC CCTCGGCATGGCCATCGACGCCAACGTGCTGATCAACGAACGGGTGCGCGAAGAGCTCCGGGCCGGCATGCCACCGCAGG CCGCCATCTCGGAAGGTTACGAACGTGCTTTCGGGACCATTCTCGACTCCAACATCACCACGCTGATCGCCGGCCTCGCC CTGTTGATCTTTGGTTCCGGCCCGGTTCGCGGCTTTGCCGTGGTGCATTGCCTGGGCATCCTGACCTCGATCTTCTCGTC CGTCGTCGTCTCGCGCGGCCTGGTCAACCTGATCTACGGTCGCCAGAAGAAACTGACCAAGGTCGCTATCGGCCAGCTCT GGAAACCGGGCGCCACGACGGCCGCCGGCCAGAAATAA Protein sequence : MNRYPLWKYITIAIALVMGFVYTLPNFFGESPAVQVSSAKATIKVDEKAKARVEDSLKAAGITHDGIQLDFNGVKTRFKD TDTQLKAKDALEKAFNPDAADPQYVVALNLLAASPQWLTSLHALPMYLGLDLRGGVHFLLQVDMKGALTKRLDSTSADLR TVMRDKNLRHGGVNREGERIIIKFRDAETQNKARIAISDSQPDLLLTDAGDAAEPRLIATLKPQAQQKIGEFALKQNITT LHNRINELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDILGRTATLEIRMVDDSTGALDAALAGNPPFGTEVYNERGGQP LLVKKQVVLTGDRLTDAQPGFDNQTQEAAVHLTLDAAGARIFKDITRENVGKRMAILLIEKGKGEVVTAPVIRTEIGGGR VQISGRMTTTEANDTALLLRAGSLAAPMEIIEERTIGPSLGAENIQKGFHSTMWGFAAIAVFMIIYYQMFGVVSVLALAS NLLFLVAILSLLQATLTLPGIAAIALTLGMAIDANVLINERVREELRAGMPPQAAISEGYERAFGTILDSNITTLIAGLA LLIFGSGPVRGFAVVHCLGILTSIFSSVVVSRGLVNLIYGRQKKLTKVAIGQLWKPGATTAAGQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-101 | 43 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-101 | 43 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-101 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-101 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-101 | 43 |
