Gene Information

Name : PMN2A_1878 (PMN2A_1878)
Accession : YP_293069.1
Strain : Prochlorococcus marinus NATL2A
Genome accession: NC_007335
Putative virulence/resistance : Virulence
Product : carboxysome shell protein CsoS1
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 536535 - 536846 bp
Length : 312 bp
Strand : +
Note : -

DNA sequence : 
ATGGCTAGCGAAACAATGGGTATTGCTCTCGGCATGATCGAGACACGCGGATTAGTACCAGCTATTGAAGCTGCTGACGC
TATGACCAAGGCAGCAGAAGTGCGCTTGATTGGTCGTGAGTTTGTTGGTGGTGGTTACGTAACAGTTTTGGTTCGCGGAG
AAACTGGTGCTGTAAACGCAGCAGTTCGTGCAGGCGCAGATGCTTGTGAGCGTGTAGGTGACGGACTAGTTGCAGCGCAC
ATTATTGCTCGTCCTCATCGTGAAGTTGAGCCAGCTTTGGGCAACGGTAACTTCTTAGGTCAGAAGGACTGA

Protein sequence : 
MASETMGIALGMIETRGLVPAIEAADAMTKAAEVRLIGREFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAH
IIARPHREVEPALGNGNFLGQKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 60
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 4e-12 54
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PMN2A_1878 YP_293069.1 carboxysome shell protein CsoS1 VFG1596 Protein 7e-12 60
PMN2A_1878 YP_293069.1 carboxysome shell protein CsoS1 VFG1597 Protein 1e-12 54
PMN2A_1878 YP_293069.1 carboxysome shell protein CsoS1 VFG1598 Protein 9e-12 52