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Name : SSON_0517 (SSON_0517) Accession : YP_309521.1 Strain : Shigella sonnei Ss046 Genome accession: NC_007384 Putative virulence/resistance : Unknown Product : rhs core protein with extension Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3209 EC number : - Position : 546074 - 549505 bp Length : 3432 bp Strand : - Note : Code: M; COG: COG3209 DNA sequence : TTGCTGGGGAAAACAGGTAAGTCGTTAAAAAGTATTGCCAATAAAGTCATCAGATGGGTAACAGATCCTGTCGATCCGGT AACCGGCGCATACTGCGACGAACGTACCGACTTCACCCTGGGCCAGACCCTCCCCCTCTCCTTCACCCGTTTCCACAGTT CTGTACTGCCGCTGCATGGCCTGACCGGCGTGGGCTGGAGCGACTCCTGGAGCGAATACGCCTGGGTGCGTGAACAGGGA AACCGGGTGGATATCATCAGCCAGGGAGCCACGCTGAGATTTGCCTTCGACGGTGACAGTGATACGGCGGTTAACCCGTA TCACGCCCAGTACATTCTGCGCCGCCGCGATGATTATCTGGAGCTGTTCGACAGGGATGCACTGAGCAGCCGCTTCTTTT ATGACGCCTTTCCGGGAATGCGTCTGCGCCACCCGGTGACTGACGATACCAGCGATGACCGCCTGGCACACAGCCCCAAT GACCGGATGTACATGCTGGGCGGGATGAGCGACACCGCCAGCAACCGCATCACGTTTGAGCGCGACAGCCAGTACCGGAT CACGGGTGTCAGTCACACCGACGGGATCCGGCTTAAACTGACGTACCACGCCAGCGGCTACCTGAAAGCCATTCACCGCA CGGATAACGACATACAGACGCTGGCGACCTACGAACAGGATGCGCGGGGGCGGCTGACAGAAGCGGATGCGCGGCTGGAC TACCACCTGTTTTATGAGTACGACGCTGCGGACCGGATCATCCGCTGGTCCGATAACGACCAGACGTGGAGCCGTTTCAC CTACGATGAACAGGGCCGGTGCGTGAATGTCACCGGGGCGGAGGGCTATTACAACGCCACGCTGGACTATGGTGACGGCT GCACCACCGTGACGGACGGCAAGGGCATTCACCGTTATTACTATGATCCTGACGGCAATATTCTGCGGGAAGAAGCGCCG GACGGCAGCACCACCATGTATGAATGGGATGAATTCCATCACCTGCTGGCCCGCCACTCCCCTGCCGGGCGGGTGGAGAA ATTTGAATACAACGCCGCACACGGTCAGTTAAGCCGTTACACGGCGGCAGACGGCGCGGAGTGGCAGTACCGCTATGATG AGCGCGGCCTGCTCAGCAACATCACCGACCCTGCCGGGCAGACGTGGACACAGCAGTGTGATGAACGCGGCCTGCCGGTA AGTCTGGTGTCGCCACAGGGCGAAGAGACCCGGCTGGCATACACCGCTCAGGGGCTGCTGTCGGGAATATTCCGCCAGGA TGAACGGCGTCTGGGCATAGAGTACGACCACCACAACCGGCCGGAAACACTCACCGACGTGATGGGCCGTGAACACCACA CCGAATACAGCGGTCACGACCTGCCAGTGAAGATGCGCGGCCCCGGCGGTCAGTCAGTGCGGTTACAGTGGCAGCAGCAC CATAAACTGAGCGGCATTGAACGTGCTGGAACCGGCGCGGAAGGATTTCGCTATGACCGCCACGGCAACCTGCTGGCCTG GACGGACGGCAACGGTGTTGTCTGGACGATGGAATACGGTCCGTTCGATTTTCCGGTGGCGCGAACGGACGGTGAAGGCC ACCGCTGGCAGTACCGCTACGATAAAGACACACTGCAACTGACAGAAGTCATCAACCCGCAGGGTGAGTCATATCTTTAT GTTCTGGATAACTGCGGCCGGGTGACGGAAGAGCGTGACTGGGGCGGCGTGGTCTGGCGTTACCGCTATGACGCCGATGG CCTCTGTACCGCCAAGGTTAACGGCCTGGAGGAAACCATCCTCTACAGCCGGGACGCCGCAGGCCGCCTGGCAGAAATCA TCTCGCCGGAAGGCAAAACGCAGTATGCCTATGACAAATCCGGCAGGCTGACGGGTATCTTCAGCCCGGACGGCACATCA CAGCGCACCGGCTATGACGAACGCGGGCGGGTGAATGTCACCACTCAGGGCCGACGGGCCATTGAATACAACTACCCCGA TGAACACACCGTCATCCGCTGTATCCTGCCACCGGAAGATGAACGCGACAGACACCCCGGTGAATCCCTGCTGAAAACCA CGTACCGCTACAACGCCGCCGGAGAACTGACAGAGGTCATTCTGCCGGGGGATGAGACGCTGACGTTCAGCCGTGATGAG GCGGGACGTGAAGTGCTCCGGCACAGTAACCGGGGTTTTGCCTGTGAACAGGGCTGGAATGCAGCCGGTCAGCCTGTCAG TCAGCGCGCCGGATTTTTTCCGGCAGAAGCCACATGGGACGGGCTGGTTCCCTCACTGGTACGGGAGTACCGTTACGACA GCGCGGGTAACGTGTCAGGCGTCACCAGCCGGGAAGATTACGGACGGGAAACACGGCGGGAGTATCGGCTGGACCGGAAC GGCCAGGTCACGGCGGTGACAGCCTCAGGCACCGGGCTGGGCTATGGCGAAGGCGATGAGTCCTATGGCTATGACAGCTG CGGCTACCTGAAGGCGCAGTCTGCGGGCAGGCACCGGATAAGTGAAGAGACTGACCAGTATGCCGGAGGCCACCGGCTGA AACAGGCCGGAAACACGCAGTATGACTATGACGCCGCAGGCCGGATGGTCAGCCGCACCAGACACCGTGACGGCTACCGA CCGGAAACAGAGCGGTTCCGGTGGGACAGCCGGGACCAGCTGACCGGGTATTGCAGCGCACAGGGTGAGCTGTGGGAATA CCGCCACGACGCCAGCGGCAGACGAACAGAGAAACGCTGCGACCGGAAGAAAATCCGCTTCACGTATCTGTGGGACGGCG ACAGTATTGCGGAAATCCGGGAATACCGCGATGATAAACTGTACAGCGTAAGGCACCTGGTGTTTAACGGCTTTGAGCTG ATAAGCCAGCAGTTCAGCCGGGTACGGCAGGCGCATCCGTCGGTGGCCCCGCAGTGGGTGACGCGGACGAATCATGCGGT GAGCGACCTGACGGGCCGCCCGCTGATGCTCTTTAACAGTGAAGGAAAGACGGTCTGGCGACCGGGGCAGACCAGCCTGT GGGGGCTGGCACTCAGCCTGCCCGCAGACACCGGCTACCCGGACCCGCGCGGGGAACTGGACCCGGAAGCCGACCCCGGC CTGCTGTATGCAGGACAGTGGCAGGATGCGGAATCCGGGCTGTGCTATAATCGGTTCCGGTATTACGAGCCGGAAACCGG AATGTACCTGGTGAGTGATCCGCTGGGGTTGCAGGGCGGGGAGCAGACTTACCGGTATGTGCCGAATCCTTGTGGGTGGG TTGATCCGCTGGGATTGGCTGCAAGTTCTAAAATCAGCAGTTTGATGGACTATATTGGCGATGGTCGTCGTGTTAGTGGG CATACGGGTTTCCTGGATGGGGTTCGTTTATCACGTAGTCAAATAAACAAGGTGATGCTGCCAACTTACTGA Protein sequence : MLGKTGKSLKSIANKVIRWVTDPVDPVTGAYCDERTDFTLGQTLPLSFTRFHSSVLPLHGLTGVGWSDSWSEYAWVREQG NRVDIISQGATLRFAFDGDSDTAVNPYHAQYILRRRDDYLELFDRDALSSRFFYDAFPGMRLRHPVTDDTSDDRLAHSPN DRMYMLGGMSDTASNRITFERDSQYRITGVSHTDGIRLKLTYHASGYLKAIHRTDNDIQTLATYEQDARGRLTEADARLD YHLFYEYDAADRIIRWSDNDQTWSRFTYDEQGRCVNVTGAEGYYNATLDYGDGCTTVTDGKGIHRYYYDPDGNILREEAP DGSTTMYEWDEFHHLLARHSPAGRVEKFEYNAAHGQLSRYTAADGAEWQYRYDERGLLSNITDPAGQTWTQQCDERGLPV SLVSPQGEETRLAYTAQGLLSGIFRQDERRLGIEYDHHNRPETLTDVMGREHHTEYSGHDLPVKMRGPGGQSVRLQWQQH HKLSGIERAGTGAEGFRYDRHGNLLAWTDGNGVVWTMEYGPFDFPVARTDGEGHRWQYRYDKDTLQLTEVINPQGESYLY VLDNCGRVTEERDWGGVVWRYRYDADGLCTAKVNGLEETILYSRDAAGRLAEIISPEGKTQYAYDKSGRLTGIFSPDGTS QRTGYDERGRVNVTTQGRRAIEYNYPDEHTVIRCILPPEDERDRHPGESLLKTTYRYNAAGELTEVILPGDETLTFSRDE AGREVLRHSNRGFACEQGWNAAGQPVSQRAGFFPAEATWDGLVPSLVREYRYDSAGNVSGVTSREDYGRETRREYRLDRN GQVTAVTASGTGLGYGEGDESYGYDSCGYLKAQSAGRHRISEETDQYAGGHRLKQAGNTQYDYDAAGRMVSRTRHRDGYR PETERFRWDSRDQLTGYCSAQGELWEYRHDASGRRTEKRCDRKKIRFTYLWDGDSIAEIREYRDDKLYSVRHLVFNGFEL ISQQFSRVRQAHPSVAPQWVTRTNHAVSDLTGRPLMLFNSEGKTVWRPGQTSLWGLALSLPADTGYPDPRGELDPEADPG LLYAGQWQDAESGLCYNRFRYYEPETGMYLVSDPLGLQGGEQTYRYVPNPCGWVDPLGLAASSKISSLMDYIGDGRRVSG HTGFLDGVRLSRSQINKVMLPTY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rhs-core | AAN64198.1 | Rhs | Not tested | macrophage toxin pathogenicity island | Protein | 2e-161 | 41 |
