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Name : rpoB (PSHAa0222) Accession : YP_338768.1 Strain : Genome accession: NC_007481 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 228338 - 232363 bp Length : 4026 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 6266829; Product type e : enzyme DNA sequence : ATGGCTTACTCTTATTCTGAAAAGAAACGTATCCGTAAGGATTTTGGTAAACGTCCACAAGTTTTGGATATACCTTTCTT ACTATCTACACAGTTAAAATCGTTTAAAAAATTCTTAGTGCCTGACGCTGATGGCGATCATGGTTTGGAAGCAGCGTTCC GTTCTGTGTTCCCAATTAAGAGCTACTCAGGAAATTCTGAGCTGCAATACGTAAGTTATCGTATTGGCGAGCCAGTTTTC GATGTAAAAGAATGTCAAATTCGCGGTGTGACTTATTCTGCTCCACTTCGCGTGAAATTGCGTCTTGTAGTTATGGACAA AGAAGCTCCAGGCACAGTTAAAGACATTAAAGAGCAAGAAGTTTACATGGGCGAAATTCCGCTCATGACCGATACCGGTA CCTTTGTAATCAATGGTACAGAGCGTGTTATCGTTTCTCAGCTACACCGTAGCCCTGGTGTATTCTTTGATAACGACCGC GGTAAAACTCACTCATCGGGTAAAGTGTTATATAACGCACGTGTTATCCCATATCGTGGTTCATGGTTAGACTTTGAATT TGATGCAAAAGATAACTTATATGTACGTATTGACCGTCGTCGTAAATTACCGGCGTCTATTATCTTACGTGCACTTGAGT ACTCGAGTGAAGACATTCTTGGTATTTTCTTCGACAACACTACGTTTGAAGTAACTGACGGTAAAGTTCTTATGGAACTG GTACCTTCACGTTTACGTGGTGAAACCGCCGCTTTTGATATTAAGAGCGAAGACGGTGAAGTGTTTGTTGAAAGTGGTCG TCGTGTTACGGCTCGCCATATCAAGAACATCGAGAAAAAAGGCATTAAGCAATTAGAAGTACCACATGAGTACATCATTG GTCGCGTATTAGCGAAAAACTATGTTGATGAGTCAACAGGTGAAGTTGTAGCTAATGCAAATGACGAGCTAACGCTTGAA TTAATGGCTGAATTGGTTAAAGCCGGTCACACTAAAATTGATACGTTATATATCAATGAAGTGGACAGCGGTGCTTACAT GTCAAATACATTGAACATTGACTCTTCAAGCAGCCGTTTAGAAGCATTAGTAGAAATTTATCGCATGATGCGCCCAGGCG AGCCACCGACGAAAGACGCGGCTGAAGCCTTATTCCAGAACTTGTTCTTCTCAGAAGAGCGCTATGACCTATCAACTGTA GGTCGTATGAAGTTCAATAGCCGTGTTGGTTACGATACCGATACAGGCCCAGGCACATTAAGCAAAGAAGACATCGTGTC GGTTATGAAAGTATTGATTGCTATTCGTAACGGTGTTGGCGATGTAGATGATATTGACCACTTAGGCAACCGTCGTATAC GTAGTGTTGGCGAAATGGCTGAGAATCAATTCCGTGTAGGTTTAGTGCGTGTAGAACGTGCTGTACGTGAGCGTTTAAGC TTAGGTGACCTAGATGCGATAATGCCACAAGATCTTATTAACGCTAAGCCTATTTCGGCAGCGGTTAAAGAGTTCTTCGG CTCGTCTCAGTTATCACAGTTCATGGACCAAAATAACCCGCTATCAGAAGTAACGCATAAACGTCGTATTTCTGCATTAG GGCCGGGCGGTCTAACTCGTGAGCGCGCAGGCTTTGAAGTACGTGACGTTCACGTAACTCACTATGGTCGCGTATGTCCA ATCGAGACTCCTGAGGGTCCAAACATCGGTCTAATTAACTCATTATCTACGTACGCACGTACTAATGATTATGGTTTCTT AGAAACACCTTACCGCAAAGTGGTAGACGGTGTTGTAACTGATGAAGTTGATTACCTATCAGCCATTGAAGAAGGTCAGT TTGTTATCGCACAGGCGAACTCAAACTTAACCGAAACCAATGAGTTTGTAGATGAACTTATTCCATGTCGTCACAAAGGT GAATCTACCTTTATGGGACGTATGGACCAGCAATATATGGATGTATCACCACAACAGGTGATCTCTGTAGCGGCAGCACT TATCCCGTTCCTAGAACACGATGATGCTAACCGTGCATTGATGGGTTCAAACATGCAACGTCAAGCAGTACCAACATTGA AAGCGGATAAGCCGTTAGTAGGTACTGGTATTGAGTTAACACTAGCGAAAGACTCTGGTGTTACTATCGTTGCAAAACGT GGTGGTGAAGTAATGTATTGTGACGCAAGTCGCATCGTTGTTAATGTACATGAAGAAGAACGCGTTCCAGGCGAAGCGGG CATCGACATTTACAACTTAACCAAATACACACGTTCTAACCAAAATACATGTATTAACCAAAAACCAACTTGTATGGTTG GCGAACCGGTTACTCGTGGCGATGTGTTAGCAGATGGTCCTTCGACTGACTTGGGCGACTTAGCTCTTGGTCAAAACTTG CGCGTGGCATTTATGCCATGGAATGGTTATAACTTCGAGGATTCAATCTTACTATCAGAGCGCGTAGTTGAAGAAGATCG TCTAACGACTATCCACATTCAAGAACTACAGTGTATTGCCCGTGATACTAAATTAGGTTCTGAAGAGATCACTGCAGATA TCCCGAATGTGGGCGAATCTGCACTAGGCAAGCTTGATGAATCAGGCGTTGTTTATATTGGTGCTGAAGTTAAAAGCGGC GATATTCTAGTAGGTAAAGTGACTCCGAAAGGCGAAACGCAATTAACTCCTGAAGAGAAGCTACTACGAGCTATCTTCGG CGAAAAAGCGTCTGACGTTAAAGACAGCTCTTTACGTGTACCAAATTCTGTAACTGGTACTGTAATTGACGTGCAAGTTT TCACCCGTGATGGTGTTGAAAAAGATAAGCGTGCGTTAGAAGTTGAAGAAATGCAGCTTCGCGATGCGAAGAAAGACTTC AACGAAGAGTTCCGTATTCTAGAAGCTGGTGTATTAGACCGTGCGCGTAAGTTACTTATCGCAGCTGGCTTTGATGAAGA CAAATTAGCGTTATTAAATGCTGAGAAGCTACTTACGCAAAGCCTTGCTGAAGAAGACAAGCAAGCTGAGCTTGAGCAAT TAGCAGCCCAGTATGACGAGCTTAAAGCTGAATACGATAAGAAGTTTGAAAACAAACGTCGTAAAATCACTCAAGGCGAT GACCTAGCACCTGGCGTACTTAAGATTGTTAAAGTATACCTAGCTGTTAAACGTTGTATCCAACCGGGTGATAAAATGGC GGGTCGTCATGGTAACAAAGGTGTTATCTCGACTATCGTACCAGTAGAAGATATGCCATACGATGATAAAGGTCGTACGG TAGATATCGTACTTAACCCACTGGGTGTACCATCACGTATGAACATCGGTCAGATCCTTGAAACACATATGGGTCTAGCT GCACGTGGTATTGGTGAACGCATTGAAGAAATGATGAAAGAGCAACGTGAGCTGCATGAGTTACGCGCCTTCATCAAGCA AGCCTACGAAATTGGCGAATCTCGTCAAGTAGTAGACATTGATAGCTTTACAGATGACGAAATTCGTCGTTTGGCTGAAA ACTTAAAAGGTGGTTTACCAATAGCTACTCCAGCATTTGATGGCGCGAAAGAAAACGAAATCAAAGACATGCTAGAGCTT GCGGGCTACCCAAGAAGTGGTCAGGTTACACTTTATGATGGCCGTACTGGCGATCAGTTCGAACGTCAAGTAACCGTTGG TTACATGTACATGCTGAAACTGAATCACTTAGTTGATGACAAAATGCATGCGCGTTCTACTGGTTCTTATAGCCTTGTTA CTCAGCAGCCGCTGGGTGGTAAAGCACAGTTCGGTGGCCAGCGTTTTGGTGAGATGGAAGTATGGGCACTTGAAGCTTAC GGTGCTGCTTACACTCTACAAGAAATGCTAACAGTGAAATCGGATGACGTGAACGGTCGTACTAAGATGTATAAAAACAT CGTTGATGGTAACCATAAAATGGAACCAGGTATGCCAGAATCGTTTAACGTATTGTTAAAAGAAATCCGCTCACTGGGTA TCAACATCGAGTTGGAAGAAAATTAA Protein sequence : MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLKSFKKFLVPDADGDHGLEAAFRSVFPIKSYSGNSELQYVSYRIGEPVF DVKECQIRGVTYSAPLRVKLRLVVMDKEAPGTVKDIKEQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDR GKTHSSGKVLYNARVIPYRGSWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYSSEDILGIFFDNTTFEVTDGKVLMEL VPSRLRGETAAFDIKSEDGEVFVESGRRVTARHIKNIEKKGIKQLEVPHEYIIGRVLAKNYVDESTGEVVANANDELTLE LMAELVKAGHTKIDTLYINEVDSGAYMSNTLNIDSSSSRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSTV GRMKFNSRVGYDTDTGPGTLSKEDIVSVMKVLIAIRNGVGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRVCP IETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGVVTDEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKG ESTFMGRMDQQYMDVSPQQVISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKDSGVTIVAKR GGEVMYCDASRIVVNVHEEERVPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVTRGDVLADGPSTDLGDLALGQNL RVAFMPWNGYNFEDSILLSERVVEEDRLTTIHIQELQCIARDTKLGSEEITADIPNVGESALGKLDESGVVYIGAEVKSG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEEMQLRDAKKDF NEEFRILEAGVLDRARKLLIAAGFDEDKLALLNAEKLLTQSLAEEDKQAELEQLAAQYDELKAEYDKKFENKRRKITQGD DLAPGVLKIVKVYLAVKRCIQPGDKMAGRHGNKGVISTIVPVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLA ARGIGERIEEMMKEQRELHELRAFIKQAYEIGESRQVVDIDSFTDDEIRRLAENLKGGLPIATPAFDGAKENEIKDMLEL AGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPESFNVLLKEIRSLGINIELEEN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 68 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 68 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 79 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 79 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 79 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 79 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 79 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 78 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 71 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 68 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 68 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 68 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 68 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 68 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 68 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 64 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 62 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 48 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 47 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 47 |
| rpoB | YP_338768.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 47 |
