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Name : secD (Noc_2350) Accession : YP_344338.1 Strain : Nitrosococcus oceani ATCC 19707 Genome accession: NC_007484 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2694015 - 2695871 bp Length : 1857 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGTTATCCTCTTTGGAAAAACCTGCTCGTAGTGGCAGTAGTGCTTGTTGGTATCCTTTATGCTGTGCCCAATTT GTTTGGCGATACCCCAGCTTTGCAGATTTCGGCGACTCGTGGTGCGAGTCTCAAACCAGAGACTTTGGCCCGGGTGGAAC GGTTGCTCCAGGAGCAGGGTTTGGATTACCAATCGGTTCGCTTGGAAGATCAGCGCCTCTTGGTCCGCCTTCGCCGCCTG GAAACTCAACTCAAAGCTCAGGATGCTCTTAGGGCAGAATTGGGTTCCGACTATTCAATTGCCCTGCACTTGTCACCCGC TACCCCGGATTGGTTGCGAGCTATTGGGGGATTACCCATGAACTTGGGTTTGGACCTCCGTGGCGGCGTGCATTTTTTGA TGGAGGTAGACATGGAAGCCGCGGTCCAGCAGGCTGAGGAGCGCTATGTGGAAGATCTGCGGTCCTTGTTGCGGGAAAAT AAAATACGTTACCTCAGCATTGGGCGATTGGGCGCAGGCGGAGTAGAGATTAAATTTCGTAATGAACAACAACGTGAGCA AGCGGAAACGCTCATCCACGATGAGTATTTCGATTTGTTGTTAGAGCCGGCGGAGGGGGAGCGAGCCCCCCGTCTGGAAA TTAAGCTAAGCGAAAAGGAACAACGGGAGATCCAGCGCTTGGCTTTACAGCAAAATATTACCACCTTACGTAATCGGATT AATGAACTCGGCGTGGCGGAACCCACTATTCAGCAGCAAGGGGAGAACCGTATTGTAGTGCAGCTGCCGGGTGTTCAGGA TACGGCTCGGGCCAAGGAGATTTTAGGGGCAACGGCAACCTTGGAATTTCGCCTGGTGGATACAAGTCACGACGTTCAGC GAGCAGTGGAAGGAAGAGTGCCAGTAGGCTCCCGCTTGTATCATGAGCGTGGCGGAGCCCCTATCTTGCTAAAGAAGCGG GTAATATTGACGGGTGATCATGTTACAGATGCGTCTTCGGGGATTGAGCAGCAAGGCGGTAGCCCAGCGGTGTTTGTCTC TCTGGATGGGCAAGGAGCCCGACATTTCAGTCAAGTAACGGGAGAGAATATTGGCAAGCCCATGGCGGTGGTCTTTATAG AGACCAAGTCCGAGATCCGGATGGAGGAGGGGGAGCCAGTCAAAGTTCGCCGCCGGGTACCTGAGGTGATCAATGTGGCC ACCATTCGGGATCAACTCAGCAAACGTTTCCAGATCACGGGTCTCGATTCTACTGAGGAAGCCCGTAATTTAGCTTTGTT ATTGCGGGCAGGTGCATTAGCGGCGCCCATTGATATCGTTGAGGAACGGACCATCGGCCCAAGCTTGGGACAGGATAATA TCGACAAGGGTTTTCAGTCTGTACTGATAGGTTTTGCCTTGGTGCTGGTGTTTATGGCTCTTTATTACCGGGTTTTTGGT CTCGTTGCCAATTTGGCTCTGGCCGCCAATCTGGTGCTGGTGGTTTCGCTTCTCTCTATGCTGCAAGCGACTCTGACGTT GCCGGGTATTGCCGGTATCGTACTCACGGTAGGTATGGCAGTCGATGCTAACGTATTGATTTTTGAGCGTATTCGCGAGG AACTTCGAAATGGCAGCAGCCCTCAGGCGAGTATCGAGGCAGGTTATGCCAATGCCTTATCCACTATTGTGGACGCTAAT ATCACTACCTTAATAACCGCGGTTGTCCTGTTTGGGTTTGGGACGGGCCCTATCAAGGGGTTTGCGGTTACGTTATCCTT GGGTATTCTGACTTCTATGTTTACCGCGATTGTGGGGACCCGGGCCGTAATTAATTTGATTTATGGAAGGCGGCGTAAAG TAAAGTTGTCTATCTGA Protein sequence : MNRYPLWKNLLVVAVVLVGILYAVPNLFGDTPALQISATRGASLKPETLARVERLLQEQGLDYQSVRLEDQRLLVRLRRL ETQLKAQDALRAELGSDYSIALHLSPATPDWLRAIGGLPMNLGLDLRGGVHFLMEVDMEAAVQQAEERYVEDLRSLLREN KIRYLSIGRLGAGGVEIKFRNEQQREQAETLIHDEYFDLLLEPAEGERAPRLEIKLSEKEQREIQRLALQQNITTLRNRI NELGVAEPTIQQQGENRIVVQLPGVQDTARAKEILGATATLEFRLVDTSHDVQRAVEGRVPVGSRLYHERGGAPILLKKR VILTGDHVTDASSGIEQQGGSPAVFVSLDGQGARHFSQVTGENIGKPMAVVFIETKSEIRMEEGEPVKVRRRVPEVINVA TIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIVEERTIGPSLGQDNIDKGFQSVLIGFALVLVFMALYYRVFG LVANLALAANLVLVVSLLSMLQATLTLPGIAGIVLTVGMAVDANVLIFERIREELRNGSSPQASIEAGYANALSTIVDAN ITTLITAVVLFGFGTGPIKGFAVTLSLGILTSMFTAIVGTRAVINLIYGRRRKVKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-109 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 7e-110 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 7e-110 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 7e-110 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 5e-110 | 48 |
