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Name : Noc_0943 (Noc_0943) Accession : YP_342985.1 Strain : Nitrosococcus oceani ATCC 19707 Genome accession: NC_007484 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 1041349 - 1043334 bp Length : 1986 bp Strand : - Note : - DNA sequence : ATGACTCCAGAACTTGGACAACTCGCACTGATTTTAGCCCTCACCCTAGCCTTCTCCCAGGCAATATTGCCTCTTATTGG CGCTCAGCGTGGAATCATAGGCTGGATGAATGTAGCACGAACTGCCGCTTACGGTCAGTGTTTCTTCCTAATCGTTGCCT TCACCTGCCTGGCTATCAGCTTTCTCAATAATGATTTTTCCGTAGCCTATGTAGCCAATAATTCTAATTCCGCGCTACCA CCAGCCTATCGTTTTGCCGCCATCTGGGGGTCCCACGAAGGATCACTATTACTGTGGAGCCTAACTCTAGGCCTGTGGAC AGTAGCTGTGGCCTTATTTAGCCGTAGCATACCATTAGCCTATGTGGCCCGTGTGCTAGCCGTCATGGGCATGGTTAATG TGGGCTTTCTGTTATTTATGCTCCTAACCTCTAATCCATTTTTACGTCTTTTCCCCGCCCCCTTAGACGGACAAGATCTC AATCCTTTATTGCAAGACCCCGGCCTAGTGATGCACCCCCCCATGCTCTATATGGGTTATGTGGGCTTTTCCGTGGCCTT TAGCTTTGCCATTGCGGCGCTTATCGGCAAACGCCTAGATGCAGCCTGGGCGCGGTGGTCTAGACCCTGGACGGTAGTTG CGTGGTTATTTTTATCTATTGGGATTACCTTAGGGAGCTGGTGGGCCTACTACGAACTCGGCTGGGGCGGCTGGTGGTTC TGGGATCCGGTTGAAAATGCTTCCTTTATGCCGTGGCTTGTGGGTACCGCGCTAATTCATTCCCTTGCCGTGACTGAAAA ACGGGATGCCTTCAAGCGCTGGACAGTACTGCTCGCCATTTTTACTTTCTCCCTCAGCCTGCTTGGAACCTTTATAGTGC GCTCCGGGGTACTCACCTCCGTGCATGCCTTTGCAACGGATCCTACGCGGGGTGTTTTTATCCTGATATTGCTAGGACTT GCCGTAGGCGGATCACTCCTTCTCTATGCCGTGCGGGTGCCGCAAGTACAGGATACAGGCCGTTTTCATCTTCTTTCCCG CGAAGGGCTTCTATTGGCGAACAATGTCGTACTCATAGTCGCTGCAGGCAGTGTGTTGTTAGGTACTCTTTATCCACTGG TTCTCGAAGGATTAGGGTTAGGTAAAATCTCGGTAGGACCACCCTATTTTGATACCGTATTTGTGCCTTTAATGGTCATC CTAGCTTTCTTGCTAGGAGCTGGCCCCCTATCCCGCTGGAAGCAGCAAAGCTTAGGGGAACTCGTCAAAAAATTAGGTTT TATCTTTGCCATTAGCTTAACAATTGGAATTCTAGTTCCCTATATCGTTGATAAAGGAGATATTTTCAGCGCAGCCGCCG GGCTGACCGTCGCTATCTGGGTTGCCCTAACAACTCTTCTTGGCCTCTGGAATCGACTCAGAAACCGGGGGGGAATTGTA GCAGGAGCACGTTCCTTATCGCGGAGCTTTATAGGCATGTCCTTGGCCCATACCGGCTTTGCAGTCGCTATTGTCGGCGT CACTTTAACCACTATCTATGGACAGGACCGGGATGTGGGCGTTACCGTTGGCGAGACAGCGGAATTAGGCGCCTATGAGT TCCGCCTAGATAAAATTCATGAGGTTGATGGTCCCAACTATCGGGCTATTGAGGGAACTATATCGGTCTTCAAGGGTGAA GATTTGATCACGACCCTCCACCCCCAAAAACGCATTTACCTAGTACAAACTTCTCCCATGACGGAAGCGGGTATTGATGC AGGGTTATTCCGGGATCTATTCGTTGCCTTGGGAGAATCTCTTGGCAGTAATACTTGGAGTCTACGCATTCAATTTAAGC CTTTTGTACGCTGGATTTGGCTGGGTGGATTATTGATGGCCCTAGGCGGCGCAGTTGCCGCCAGTGATCGACGTTACCGG GTGAGCGTACAAAAAATGCGCTTCAAGCTTAACCCTCCCAAACCTGAGGCTGCGGCTGAAATCTAA Protein sequence : MTPELGQLALILALTLAFSQAILPLIGAQRGIIGWMNVARTAAYGQCFFLIVAFTCLAISFLNNDFSVAYVANNSNSALP PAYRFAAIWGSHEGSLLLWSLTLGLWTVAVALFSRSIPLAYVARVLAVMGMVNVGFLLFMLLTSNPFLRLFPAPLDGQDL NPLLQDPGLVMHPPMLYMGYVGFSVAFSFAIAALIGKRLDAAWARWSRPWTVVAWLFLSIGITLGSWWAYYELGWGGWWF WDPVENASFMPWLVGTALIHSLAVTEKRDAFKRWTVLLAIFTFSLSLLGTFIVRSGVLTSVHAFATDPTRGVFILILLGL AVGGSLLLYAVRVPQVQDTGRFHLLSREGLLLANNVVLIVAAGSVLLGTLYPLVLEGLGLGKISVGPPYFDTVFVPLMVI LAFLLGAGPLSRWKQQSLGELVKKLGFIFAISLTIGILVPYIVDKGDIFSAAAGLTVAIWVALTTLLGLWNRLRNRGGIV AGARSLSRSFIGMSLAHTGFAVAIVGVTLTTIYGQDRDVGVTVGETAELGAYEFRLDKIHEVDGPNYRAIEGTISVFKGE DLITTLHPQKRIYLVQTSPMTEAGIDAGLFRDLFVALGESLGSNTWSLRIQFKPFVRWIWLGGLLMALGGAVAASDRRYR VSVQKMRFKLNPPKPEAAAEI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 4e-136 | 56 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 5e-118 | 56 |
