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Name : secD (Pfl01_4619) Accession : YP_350347.1 Strain : Pseudomonas fluorescens Pf0-1 Genome accession: NC_007492 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 5217219 - 5219090 bp Length : 1872 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGAACAAATATCCTCTGTGGAAATACATTCTGATCCTGGCGGTGCTGGCGATCGGTCTGATTTATTCCGCTCCGAA TCTATACCCCGATGACCCGGCCATTCAGATCAGCGGCGCCAGCACGGCCCTGCAGGTCAATCAGGCCGATCTGGATCGCG TGAGCACCGCGCTCAAGGAATCCGGGATCAACGTCAAGGCTTCGAGCCTGGCTGCGAACGGCAAGGGCGGTCTGATCCGT CTGACCAAGGCTGAAGACCAGCTGCCGGCAAAAGACGTTGTTCGCAAGGCATTGGGTGATGACTACGTCGTCGCGCTGAA CCTGGCACAAACCACCCCGCAATGGTTGCGCAACCTGGCTGCGCATCCGATGAAGCTGGGTCTGGACTTGTCCGGTGGTG TGCACTTCCTGCTGGAAGTGGACATGGACAAAGCCCTCGACGCCCGCCTGAAAGTCTACGAAGGCGACGTCAAGAGCCTG CTGCGCAAAGAGAAGCTGCGTTATCGCAGCCTGCCGCAACTCAATGGCGCCATTCAGCTGGGCTTCAGCGATGCTGATTC CCGCGAACAGGCCCGTGCGCTGATCCGCAAGAATTTCAACGATTTCGACATTGTTCCGGCCGACCTCAACGGTCAACCGG TGCTGCGTCTGGCGATGACCCCGGCCAAGCTGGCGGAAATCCGTGAATACTCCATCAAGCAGAACCTGACCACGGTCCGT AACCGCGTCAACGAGCTGGGTGTTGCCGAACCGATCGTCCAGCGTCAGGGTGCCAACCGTATCGTGGTTGAGCTGCCGGG CGTGCAGGACACTGCCGAAGCCAAGCGTATCCTCGGCAAGACGGCCAACCTGGAGTTCCGTCTGGCTGCAGAGCCGGGCG CTTCGAAAGCCACTTCCGAGACCTTCGAATTCCGTGAAGGCAAGCGTCCTCCTGCGCAGATCGAGCGTGGTCTGATCATC ACCGGTGACCAGGTGACTGACGCCAAGGCCGGTTTCGATTCGCAGCACGGTACGCCTGAAGTGAACATCCGCCTGGATGG TCACGGTGGTGATCTGATGAACCGCGCGACCCGCAGCAACGTCGGTCGCAGCATGGCGGTGATCTTCATCGAACAGCGCC CGGTCACTACTTACGTCAAGCAAGTGGTCGACGGCGTCGAAAAAGACGTGCCGGTGCAGACCTTCAAGGAAGAGAAGAAA ATCATCAGCCTGGCGACCATTCAGTCGCCGCTGGGTGCGCAGTTCCGTATCACCGGCCTGAACGGCCAGGGCGAGTCGTC CGAACTGGCGCTGTTGCTGCGTGCCGGTGGTCTGGCTGCTCCGATGTACTTTGCTGAAGAACGCACCATCGGCCCGAGCC TGGGTGCGGACAACATCACCAAGGGTATCGATGCATCGCTGTGGGGCATGTTGTTCGTCTCGCTGTTCATCATCGCCATC TACCGCTTCTTCGGCCTGATCGCCACCGTTGCACTGGCGGTGAACATGGTGTTGCTGCTGGCGCTGATGTCGCTGCTGGG TGCTACGCTGACCCTGCCGGGTATCGCCGGTATCGTGTTGACCATGGGTATGGCGGTCGACGCCAACGTGCTGATCTTCT CGCGGATTCGTGAAGAGATCGCCGCCGGCATGACCGTGCAACGTGCAATCAACGAAGGCTTCGGCCGGGCATTCACTGCG ATTCTCGACGCCAACCTGACCACCTTGCTGGTCGGCGGCATCCTCTTCGCCATGGGCACAGGCCCGGTGAAAGGCTTTGC AGTGACCATGTCCCTCGGGATCTTTACCTCGATGTTCACGGCCATCATGGTGACCCGCGCAATGGTCAACCTGATCTTTG GCGGACGTGACTTCAAGAAGTTGTGGATTTAA Protein sequence : MLNKYPLWKYILILAVLAIGLIYSAPNLYPDDPAIQISGASTALQVNQADLDRVSTALKESGINVKASSLAANGKGGLIR LTKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLAAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSL LRKEKLRYRSLPQLNGAIQLGFSDADSREQARALIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSETFEFREGKRPPAQIERGLII TGDQVTDAKAGFDSQHGTPEVNIRLDGHGGDLMNRATRSNVGRSMAVIFIEQRPVTTYVKQVVDGVEKDVPVQTFKEEKK IISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAI YRFFGLIATVALAVNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTA ILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
