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Name : Pfl01_5187 (Pfl01_5187) Accession : YP_350915.1 Strain : Pseudomonas fluorescens Pf0-1 Genome accession: NC_007492 Putative virulence/resistance : Virulence Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 5834897 - 5835415 bp Length : 519 bp Strand : + Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate DNA sequence : GTGTCTTCAGCCCAAAGCCCTCACAGTGAGCTCGTCGGTGCGTTGTATCGCGACCACCGTGGCTGGCTGCTGGCCTGGCT GCGGCGTAACGTGGCTTGCCCGCAACGGGCCGAAGACCTGAGCCAGGACACTTTCGTCCGCCTGCTCGGCCGCGACGAAC TGCTGACACCGCGCGAACCCCGGGCATTTCTGGTGGCGATCGCCAAAGGGTTGTTGTTCGACTACTTCCGCCGGGCGGCG CTGGAACAGGCGTATCTGACCGAACTGATGCTGATCCCCGAGGGCGAGCAGCCCTCGGTCGAAGAACAGCAACTGATACT AGAAGACCTCAAGGCCATCGACCGCATGCTCGACAAGCTGTCGACCAAGGCCCGCGCCGCTTTCCTCTATAACCGCCTCG ACGGCCTGACCCACGCCGAAATCGCCGACAAACTCGGCGTGTCGGTCCCCCGCGTGCGTCAGTACCTGGCCCAGGGCATC CGCCAGTGCTACATCGCGCTGTACGGTGAGCCGACATGA Protein sequence : MSSAQSPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELLTPREPRAFLVAIAKGLLFDYFRRAA LEQAYLTELMLIPEGEQPSVEEQQLILEDLKAIDRMLDKLSTKARAAFLYNRLDGLTHAEIADKLGVSVPRVRQYLAQGI RQCYIALYGEPT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 9e-35 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pfl01_5187 | YP_350915.1 | RNA polymerase sigma factor | VFG1049 | Protein | 4e-35 | 48 |
