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Name : rpoB (RSP_1699) Accession : REF_jgi:RSP_1699 Strain : Genome accession: NC_007493 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 293626 - 297759 bp Length : 4134 bp Strand : + Note : IMG reference gene:2512953611; PFAM: RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 3; RNA polymerase beta subunit external 1 domain; TIGRFAM: DNA-direc DNA sequence : ATGGCTCAGAGCTACGTTGGCCAGAAACGTATCCGCAGGTACTACGGCAAGATCCGCGAAGTGCTGGAGATGCCGAACCT GATCGAGGTTCAGAAATCCTCCTACGATCTGTTCCTGAAGTCGGGCGACGGCCCGAAGGCGGCCGATGGCGAAGGCATCC AGGGCGTCTTCCAGTCGGTCTTCCCGATCAAGGACTTCAACGAGACCGCCGTGCTCGAGTTCGTGAAATACGAGCTCGAA AAGCCGAAATATGACGTGGACGAGTGCCAGCAGCGCGACATGACCTATGCCGCGCCGCTGAAGGTGACGCTGCGCCTGAT CGTGTTCGATGTCGACGAGACCACGGGCGCCCGCTCGGTCAAGGACATCAAGGAGCAGGACGTCTACATGGGCGACATGC CCCTGATGACCGCCAACGGCACGTTCATCGTGAACGGCACCGAGCGCGTGATCGTCAGCCAGATGCACCGCAGCCCCGGC GTGTTCTTCGACCACGACAAGGGCAAGACCCACTCCTCGGGCAAGCTCCTGTTCGCCTGCCGCATCATCCCCTACCGCGG TTCGTGGCTGGACTTCGAATTCGACGCGAAGGACATCGTCTTCGCGCGCATCGACCGTCGCCGGAAGCTGCCGGTGACGA CGCTGCTCTATGCCCTCGGCATGGATCAGGAAGGCATCATGGATGCCTATTACGAAACCGTGAACTTCAAGCATCAGAAG AACCGCGGCTGGGTCACCCGGTTCTTCCCCGAGCGCGTGCGCGGCACCCGTCCCACCTACGATCTCGTGGATGCGGCCAC CGGCGAGGTCATCCTGAAGGCGGGCGAGAAGGCCACGCCGCGGATGGTCAAGAAGTGGATCGACGAGGCTCAGATCACCG AGCTTCTGGTGCCGTTCGACCATATCGTCGGCCGCTATGTCGCGCAGGACATCATCAACGAGGAAACCGGCGAGATCTGG GTCGAAGCCGGTGACGAACTCACGATGGAGTATGACCGCGACGGCGAGGTGAAGGGCGGCACGCTGAAGCTGCTGCTCGA TCAGGGCATCACCGACATCCCGGTGCTCGACATCGACAATGTCAACGTCGGCCCCTACATCCGCAACACGATGGCGGCGG ACAAGAACATGGGCCGCGACACCGCGCTCATGGACATCTACCGCGTCATGCGTCCGGGCGAGCCGCCGACCGTCGAGGCG GCGTCGAACCTGTTCGACACGCTGTTCTTCGACAGCGAGCGCTATGACCTCTCGGCCGTCGGCCGCGTGAAGATGAACAT GCGTCTCGACCTCGGCAAGCCCGACACCCAGCGCACGCTCGACCGCGACGACATCATCGCCTGCATCAAGGCGCTGACCG AGCTGCGCGACGGCAAGGGTGAGATCGACGACATCGACCACCTCGGCAACCGCCGGGTGCGCTCGGTGGGCGAGCTCATG GAGAACCAGTACCGCGTGGGTCTCCTGCGCATGGAGCGCGCGATCAAGGAACGCATGTCCTCGGTCGAGATCGACACGAT CATGCCGCAGGATCTGATCAACGCGAAGCCCGCGGCGGCCGCGGTGCGCGAGTTCTTCGGCTCGTCGCAGCTCTCGCAGT TCATGGACCAGACCAACCCGCTGTCGGAAGTCACCCACAAGCGGCGTCTCTCGGCCCTCGGGCCGGGCGGTCTGACCCGC GAGCGCGCGGGGTTCGAGGTGCGCGACGTTCACCCGACCCACTATGGCCGGATGTGCCCGATCGAGACGCCGGAAGGCCA GAACATCGGCCTCATCAACTCGCTCGCGACCTTCGCCCGCGTGAACAAATACGGCTTCATCGAGACCCCTTACCGGAAGG TCGTCGAGGGTGCCGTGACCGACGACGTGGTCTACATGTCGGCCACCGAGGAGATGCGGCACACCGTGGCGCAGGCCAAC GCGCAACTCGACGAGGAGGGCCGGTTCGTCTCCGACCTGATCTCGTCGCGCAAGGCGGGCGAGTTCATGCTGAACCCGCC GGATGCCATCGACCTGATCGACGTGTCGCCGAAGCAGCTCGTCTCGGTTGCGGCCTCGCTGATCCCGTTCCTCGAGAACG ACGACGCGAACCGCGCGCTGATGGGCTCGAACATGCAGCGTCAGGCGGTGCCGCTCCTGCAATCCGACGCGCCCTTCGTG GGCACGGGGATCGAGGCCGTGGTGGCGCGTGACTCCGGGGCCGCCATCATGGCGCGCCGCGCCGGCGTGATCGACCAGGT GGATGCGACGCGTATCGTCGTGCGCGCCACCGAGATGCTGGAGCCGGGCGAGCCGGGCGTCGACATCTACCGTCTGCGCA AGTTCAAGCGCTCGAACCAGTCGTCCTGCATCAACCAGCGTCCGCTGGTGAAGGTGGGTGACGTGGTGCACCGTGGCGAG GTGGTGGCCGACGGCCCCTGCACCGACATGGGCGAGCTGGCCCTCGGCCGGAACGTGATCGTGGCCTTCATGCCGTGGAA CGGCTACAACTACGAGGACTCGATCCTGATCTCCGAGCGGATCCTCCGCGACGACGTCTATACCTCGATCCACATCGAGG AATACGAGGTCGCGGCGCGGGATACCAAGCTCGGGCCGGAAGAGATCACCCGCGACATCCCGAACGTCGGCGAGGAAGCC CTGCGCAACCTCGACGAGGCCGGCATCGTCTATATCGGCGCCGAAGTGCAGCCGGGCGACATTCTCGTGGGCAAGATCAC CCCCAAGGGCGAAAGCCCGATGACGCCGGAAGAAAAGCTCCTCCGCGCCATCTTCGGCGAAAAGGCCTCGGACGTGCGCG ACACGTCGCTGCGCCTGCCGCCGGGGGCCTACGGCACGATCGTGGAAGTGCGGGTCTTCAACCGCCACGGCGTCGACAAG GACGAGCGGGCACTGCAGATCGAGCGCGAGGAAGTCGAGCGTCTGGCCCGTGACCGGGACGACGAGCTCGCGATCCTCGA GCGCAACATCTACTCGCGTCTGCGCACGCTGATCATGGGCAAGACCGCGGTGAAGGGGCCGAAGGGCATCCGGGCGGGCT CGGAGATCAACGAGGACCTGCTGTCCACGCTGTCGCGTGGCCAGTGGTGGCAGCTGGCGCTGGGTGAGGAAGCCGACGCG AAGGAAGTCGAGGCCCTCCACGAGCAGTTCGAGGCGCAGAAGCGCGCGCTCGATCACCGCTTCGAGGACAAGGTCGAGAA GGTCCGTCGCGGCGACGACCTGCCTCCGGGCGTGATGAAGATGGTCAAGGTCTTCGTGGCTGTGAAGCGCAAGCTGCAGC CGGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGCGTCATCTCCAAGGTCGTGCCGATCGAGGACATGCCGTTCCTT GCGGACGGCACGCATGTCGACCTCGTGCTCAACCCGCTCGGCGTGCCGTCGCGGATGAACGTGGGGCAGATCCTCGAGAC CCACATGGGCTGGGCCGCACGCGGTCTGGGCATCAAGATCGACGAGGCGCTGCAGGACTACCGCCGCTCGGGCGACCTCA CGCCGGTGAAGGAGGCCATGCGTCTCGCCTATGGCGACGAGACCTATGAAGGGGCCTTCGGCGACCGCGAGGACGAGGAT CTGGTCGAAATGGCCGGCCGCGTCACCAAGGGCGTGCCGATCGCGACGCCGGTCTTCGACGGGGCGAAGGAGCCCGACGT CAACGACGCGCTGCGCCGGGCCGGCTTCGACCAGAGCGGGCAGTCCATCGTCTTCGACGGCCGCACGGGCGAGCAGTTCG CGCGTCCCGTCACCGTGGGCGTGAAGTACATGCTGAAGCTGCACCACCTGGTGGACGACAAGCTGCACGCGCGGTCGACC GGTCCGTACTCGCTCGTCACCCAGCAACCGCTGGGCGGCAAGGCGCAGTTCGGTGGCCAGCGTCTGGGCGAGATGGAGGT CTGGGCTCTGGAAGCCTACGGCGCCGCCTACACCCTGCAGGAGATGCTGACGGTGAAGTCGGACGACGTGGCGGGCCGCA CGAAGATGTACGAGTCCATCGTCAAGGGCGAAGACAACTTCGAGGCCGGCGTCCCGGAGTCGTTCAACGTGCTCGTCAAG GAAGTGCGGGGCCTCGGCCTCAACATGGAACTCCTGGATGCGGACGAGGAATAA Protein sequence : MAQSYVGQKRIRRYYGKIREVLEMPNLIEVQKSSYDLFLKSGDGPKAADGEGIQGVFQSVFPIKDFNETAVLEFVKYELE KPKYDVDECQQRDMTYAAPLKVTLRLIVFDVDETTGARSVKDIKEQDVYMGDMPLMTANGTFIVNGTERVIVSQMHRSPG VFFDHDKGKTHSSGKLLFACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGMDQEGIMDAYYETVNFKHQK NRGWVTRFFPERVRGTRPTYDLVDAATGEVILKAGEKATPRMVKKWIDEAQITELLVPFDHIVGRYVAQDIINEETGEIW VEAGDELTMEYDRDGEVKGGTLKLLLDQGITDIPVLDIDNVNVGPYIRNTMAADKNMGRDTALMDIYRVMRPGEPPTVEA ASNLFDTLFFDSERYDLSAVGRVKMNMRLDLGKPDTQRTLDRDDIIACIKALTELRDGKGEIDDIDHLGNRRVRSVGELM ENQYRVGLLRMERAIKERMSSVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTR ERAGFEVRDVHPTHYGRMCPIETPEGQNIGLINSLATFARVNKYGFIETPYRKVVEGAVTDDVVYMSATEEMRHTVAQAN AQLDEEGRFVSDLISSRKAGEFMLNPPDAIDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQSDAPFV GTGIEAVVARDSGAAIMARRAGVIDQVDATRIVVRATEMLEPGEPGVDIYRLRKFKRSNQSSCINQRPLVKVGDVVHRGE VVADGPCTDMGELALGRNVIVAFMPWNGYNYEDSILISERILRDDVYTSIHIEEYEVAARDTKLGPEEITRDIPNVGEEA LRNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRVFNRHGVDK DERALQIEREEVERLARDRDDELAILERNIYSRLRTLIMGKTAVKGPKGIRAGSEINEDLLSTLSRGQWWQLALGEEADA KEVEALHEQFEAQKRALDHRFEDKVEKVRRGDDLPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPIEDMPFL ADGTHVDLVLNPLGVPSRMNVGQILETHMGWAARGLGIKIDEALQDYRRSGDLTPVKEAMRLAYGDETYEGAFGDREDED LVEMAGRVTKGVPIATPVFDGAKEPDVNDALRRAGFDQSGQSIVFDGRTGEQFARPVTVGVKYMLKLHHLVDDKLHARST GPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKMYESIVKGEDNFEAGVPESFNVLVK EVRGLGLNMELLDADEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 58 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 59 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 58 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 58 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 58 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 58 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 58 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 58 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 58 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 58 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 58 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 58 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 57 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 57 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 57 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 57 |
| rpoB | REF_jgi:RSP_1699 | DNA-directed RNA polymerase beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 56 |
