|
Name : clpB (RSP_1408) Accession : REF_jgi:RSP_1408 Strain : Genome accession: NC_007493 Putative virulence/resistance : Virulence Product : Chaperone ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3183184 - 3185796 bp Length : 2613 bp Strand : + Note : IMG reference gene:2512956455; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB DNA sequence : ATGAACCTCGAGAAGTTCACGGAGCGGTCGCGCGGGTTCCTTCAGGCCGCGCAGACGATCGCGATGCGGGAAAGCCACCA GCGGCTGGCGTCCGAACATCTGCTGAAGGCCCTGATGGACGACGATCAGGGGCTGGCCTCGAACCTGATCCGCCGATCGG GCGGCGAGCCTGCGCGCGTGGCCGAGACGGTCGAGCTGACCATCGCCAAGCTGCCCAAGGTGTCGGGCGATGCGCAGCCC TTCATGGACCCGGGCCTCGTCCGCGTGCTGGACGAGGCGGAGAAGCTCGCGAAGAAGGCGGGCGACAGTTTCGTGCCGGT GGAGCGCATCCTGATGGCGCTGGCCATGGTCGCGTCGAAGGCCAAGGACGCGCTGGATGCGGGTGCGGTGACGGCGCAGA AGCTGAATGCCGCGATCAACGACATCCGCAAGGGGCGCACCGCCGACACGGCCTCGGCCGAGGAAGGCTATGACGCCCTG AAGAAATATGCCCGCGACCTGACGCAGGCCGCGCGGGACGGCAAGATCGACCCGATCATCGGCCGCGACGACGAGATCCG GCGCGCCATGCAGGTGCTGAGCCGGCGCACCAAGAACAACCCGGTGTTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCA TCGCCGAGGGCCTCGCCCTGCGCATCGTGAATGGCGACGTGCCCGAGAGCCTGAAGAACAAGCGCCTGCTGTCGCTCGAC ATGGGGGCGCTGATCGCGGGCGCGAAATACCGCGGCGAGTTCGAGGAGCGGCTGAAGGCCGTGCTGAACGAGGTGACCTC GGCTGCGGGCGAGATCATCCTCTTTATCGACGAGATGCACACGCTGGTAGGCGCGGGCAAATCCGAAGGCGCGATGGATG CGGCCAACCTCATCAAGCCGGCGCTGGCGCGGGGCGAGCTGCACTGCATCGGCGCTACGACGCTGGATGAGTATCGCAAG CATGTGGAGAAGGACGCGGCGCTGGCGCGGCGCTTCCAGCCCTTGATGGTCGAGGAGCCGACGGTCGAGGATACGATCTC GATCCTGCGCGGCATCAAGGAGAAGTACGAGCTGCACCACGGGGTGAAGATCGCAGACGCCGCTCTCGTGGCCGCGGCGA CGCTCTCGCACCGCTACATCACCGACCGCTTCCTGCCCGACAAGGCCATCGACCTCGTGGACGAGGCGGCGAGCCGCCTG CGGATGGAGGTCGATTCGAAGCCCGAGGAACTCGACGCGCTGGATCGGCAGATCCTGCAAGCGCAGATCGAGGCGGAGGC GCTGAAGAAGGAGGACGACGCGGCGTCGAAGGACCGGCTGGCGAAGCTCGAGAAGGAACTCTCGGGCATGACCGAACGCG CCGCCGAGATGACGGCGCAGTGGCAGGCCGAGCGCGACAAGCTCGAGGCCGCACGCGATCTGAAGGAGCAGCTGGACCGG GCCCGGGCCGAGCTCGAGCAGGTCAAGCGCGAGGGCAACCTCGCCCGCGCAGGCGAGCTGTCCTACGGGGTCATTCCTCA GATCGAGAAGAAGCTCGAGGAAGCCGAAGCGCGCGAGGGCGATCTCCTCGTCTCGGAAGCCGTGCGGCCGGAGCAGATCG CCGAGGTCGTGGAGCGCTGGACCGGCATCCCGACCTCGAAGATGCTCGAGGGCGAGCGCGAGAAACTTCTCAAGATGGAG GAGGAGCTCGGCCGCCGGGTGATCGGGCAGCGCGCCGCGCTGCGGGCGGTGGCCAATGCCGTGCGGCGGGCGCGCGCGGG GCTGAACGACGAGCGGCGGCCTCTGGGCAGCTTCCTCTTCCTTGGCCCGACGGGCGTCGGCAAGACCGAGCTGACGAAGG CGGTGGCCGAATATCTCTTCGACGACGACCAGGCGATGGTCCGCATCGACATGTCGGAGTTCATGGAGAAGCACTCGGTC GCCCGGCTGATCGGCGCGCCTCCGGGCTATGTGGGCTACGATGAGGGCGGGGTGCTGACCGAGGCCGTGCGGCGCCGTCC CTATCAGGTCGTGCTGTTCGACGAGGTCGAGAAGGCTCACCCGGAGGTGTTCAACGTGCTCCTGCAGGTGCTCGACGACG GGGTCCTGACCGACGGGCAGGGCCGGACGGTGGACTTCAAGCAGACGCTCATCATCCTGACCTCGAACCTCGGGGCCTAC GCCTTGAGCCAGCTGCCGGAAGGGGCCGATCCCGCGCCTGCCCGCGCGGCGGTGATGGAGGCGGTGCGCGGACATTTCCG GCCCGAGTTCCTGAACCGGCTCGACGAGATGGTGATCTTCGACCGCCTGTCGCGAGACGACATGGGCCAGATCGTCGAGA TCCAGCTCGGGCTCCTCGGCAAGCGGCTGGCCACCCGCAAGATCGGGCTCGAGCTCGATGCGGCGGCGAAACAGTGGCTC GCCGACGAGGGCTACGATCCGGTCTATGGCGCGCGTCCGCTGAAGCGCGTGATCCAGCGCCATCTGCAGGATCCGCTGGC CGAGATGATCCTCGCGGGCGACGTGCTCGACGGGTCGGTCGTGCAGGTCAGTGCCGGTGCCGACGGGCTCATCATCGGCG ACCGGGTCTCCTCGTCGCGGCGCGAGCGGCCGCAGGACGCCGTGGTCCACTGA Protein sequence : MNLEKFTERSRGFLQAAQTIAMRESHQRLASEHLLKALMDDDQGLASNLIRRSGGEPARVAETVELTIAKLPKVSGDAQP FMDPGLVRVLDEAEKLAKKAGDSFVPVERILMALAMVASKAKDALDAGAVTAQKLNAAINDIRKGRTADTASAEEGYDAL KKYARDLTQAARDGKIDPIIGRDDEIRRAMQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKNKRLLSLD MGALIAGAKYRGEFEERLKAVLNEVTSAAGEIILFIDEMHTLVGAGKSEGAMDAANLIKPALARGELHCIGATTLDEYRK HVEKDAALARRFQPLMVEEPTVEDTISILRGIKEKYELHHGVKIADAALVAAATLSHRYITDRFLPDKAIDLVDEAASRL RMEVDSKPEELDALDRQILQAQIEAEALKKEDDAASKDRLAKLEKELSGMTERAAEMTAQWQAERDKLEAARDLKEQLDR ARAELEQVKREGNLARAGELSYGVIPQIEKKLEEAEAREGDLLVSEAVRPEQIAEVVERWTGIPTSKMLEGEREKLLKME EELGRRVIGQRAALRAVANAVRRARAGLNDERRPLGSFLFLGPTGVGKTELTKAVAEYLFDDDQAMVRIDMSEFMEKHSV ARLIGAPPGYVGYDEGGVLTEAVRRRPYQVVLFDEVEKAHPEVFNVLLQVLDDGVLTDGQGRTVDFKQTLIILTSNLGAY ALSQLPEGADPAPARAAVMEAVRGHFRPEFLNRLDEMVIFDRLSRDDMGQIVEIQLGLLGKRLATRKIGLELDAAAKQWL ADEGYDPVYGARPLKRVIQRHLQDPLAEMILAGDVLDGSVVQVSAGADGLIIGDRVSSSRRERPQDAVVH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-95 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | REF_jgi:RSP_1408 | Chaperone ClpB | VFG2076 | Protein | 7e-107 | 45 |
