Gene Information

Name : RSP_3477 (RSP_3477)
Accession : REF_jgi:RSP_3477
Strain :
Genome accession: NC_007494
Putative virulence/resistance : Virulence
Product : type VI secretion protein, VC_A0107 family
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 547516 - 548046 bp
Length : 531 bp
Strand : +
Note : IMG reference gene:2512956987; PFAM: Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family

DNA sequence :
ATGAGCGAGAGCAAGGCGAAGGTGATCGAACGCAACCGCGCTCCGCGGGTGCAGATCGCCTATGACGTGGAGCATTACGG
CAGCCCGACGACCATCGAGCTGCCCTTCGTGATGGGGGTCATGGCCGACCTCGCCGGCAAGTCCGAGACGCGCGAGGCGC
AGAAACCCGCGGCCGAGCGGGCCTTCGTCGAGGTGGATGCCGGCCGGTTCGGCAAGTTCATGGAGGCGCTGAGCCCGCGG
GTGAAGGCACGGGTCCCGAACCGGCTGCCCGGCGGGGCGGAGGGCGGCGAGGAGGAGATGTTCGTCGATCTCAGCTTCCG
CAGCATGGGCGATTTCGCCCCCGACCGCATGGCCGAGCAGGTGCCGGCGCTGGCCGAGCTCCTGCGGATGCGGCGCCAGC
TCGAAGAGCTTCTCGGCTACATGGACGGCAAGGTCAGTGCCGAGAAGCGCATCGCCCAGCTTCTGACGAACGAGCCGCTG
CTCGCGCAGGTCGCGGGCGAGGCCGTGAAGTCGCGTCAGCCGGAGGAATGA

Protein sequence :
MSESKAKVIERNRAPRVQIAYDVEHYGSPTTIELPFVMGVMADLAGKSETREAQKPAAERAFVEVDAGRFGKFMEALSPR
VKARVPNRLPGGAEGGEEEMFVDLSFRSMGDFAPDRMAEQVPALAELLRMRRQLEELLGYMDGKVSAEKRIAQLLTNEPL
LAQVAGEAVKSRQPEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0297 NP_454879.1 conserved hypothetical protein Not tested SPI-6 Protein 5e-27 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSP_3477 REF_jgi:RSP_3477 type VI secretion protein, VC_A0107 family VFG2069 Protein 2e-25 47