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Name : Dde_2997 (Dde_2997) Accession : YP_389486.1 Strain : Desulfovibrio alaskensis G20 Genome accession: NC_007519 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 2974769 - 2978896 bp Length : 4128 bp Strand : + Note : KEGG: dvu:DVU2928 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA polym DNA sequence : ATGGGCCAGCTCACAAAAAAATTCGGCAAGATCGAAGTCACTCTTCCGATTCCGCACCTGCTCAATCTTCAGGTCGACTC GTACAAGAAGTTCCTGCAGGAAGGCGCGGCCGCTCTTGCTCCTGACGAGGGGCTTGAGGGTGTGTTCAGATCTGTGTTCC CCATCGAGGATTTCAACAGAACCGCTAGCCTTGAGTATGTCAGCTACGAAATAGGCGAGCCCAAATACGATCAGGCCGAA TGCATCTCCAAGGGTCTGACCTATGAGGCTCCTATCCGTATCAAGGTGCGTCTGGTCGTGTACGATGTGGACGAAGACTC TGAAAACCGCACCATCAGGGACATCAAGGAACAGGATATCTATTTCGGCACTCTGCCGCTGATGACGGAAAAAGGCACCT TTATCATAAATGGTACCGAGCGTGTCATCGTCAACCAGCTGCAGCGTTCTCCCGGCATCATCTTTGAGCATGACGCCGGC AAGACCCATTCCAGCCGCAAGGTGCTGTACAGCTGCCGCGTTATTCCCATGCGCGGTTCCTGGCTTGATTTCGACTACGA CCATAAAGATATACTCTACGTCCGCATCGACCGCCGCCGCAAAATGCCCGCCACCATCCTTTTCAAGGCCATGGGCATGA GCCGCTCTGACATTCTGGAGTACTTCTACAAAAAAGAATACTACACGCTTGAAGACGACGGCCGTCTGATGTGGGAACTG GACAAAGACCTGTACCGCAAGGACGTGGCCTATGCCGATGTGGCCGACGGCGAAGGCAAGGTCATCGCCAAGGCCGGCAA ACCCTACACCAAGCGTTCGTGGCGCCTGATGCTCGAAGCAGGCATTCCCGCGGTTGAAGTCGCCCCCGACTACATCGCAG GCATGTTTCTGGCCGAAGACATCGTGGACGAAGCAACCGGCGAAGTGCTGGCAGAAGCCGCCGACGAGATCACTCTTGAC CTCATCGACCGTCTGCGTGAATGCAGCATCAAGCGCGTGCCCGTGCTGCACACCAAAGGCAGCGACACGTCTTCCTCCAT CCGCGACACCCTGCTGCTCGACAAAACTGCCGATCAGGAACAGGCCCGTGTGGAAATTTACCGCAGACTGCGTCCCAGCT CGCCCCCCACACCCGAGATTGCCAGCACGTTCTTCGAGAACCTGTTCCGCAATCCCGATTATTACGACCTGTCGCCCGTG GGACGGTACAAGCTCAACCAGCGTCTGGGTCTGACCACCACGCAGGAACGCGTGCTGACCGATGAAGACATCCTTACCGC CATCCGTGTGCTCAACCACCTGAAGGACACACACGGCCCTGCGGACGATATCGACCATCTGGGCAACCGCCGCGTGCGTC CTGTGGGTGAACTGGTGGAAAACCAGTACCGCATCGGCCTTGTGCGCATGGAACGTGCCATCAAGGAACGCATGAGCCTG CAGGAAGTCTCCACGCTGATGCCGCACGATCTCATCAACCCCAAGCCTGTGCAGGCAGTGCTGAAGGAATTCTTCGGCAC CTCGCAGCTGTCGCAGTTTATGGACCAGACCAACGCCCTTTCCGAAGTGACGCACAAGCGGCGTCTTTCCGCTCTGGGCC CCGGCGGTCTTACCCGCGAACGCGCAGGCTTTGAAGTGCGTGACGTGCATACGTCGCACTACGGCCGCATCTGCCCCATT GAAACTCCTGAAGGTCCGAACATCGGCCTTATCGTTTCGCTGACCACCTATGCCAAGGTGAACGACTTCGGTTTCATCGA AACCCCGTACCGCGTTGTGCGCGACGGACAGGTGACCGACGAGGTCAAATACCTCGACGCATCCAGCGAACACGGCGAAG TGGTGGCGCAGGCCAACGCGCGTCTTGATGGCGATCACCGGTTCGTGGACGAATTCGTAACCACCCGTGTGCGTGGCGAC GTTATCATGTCCCCGCGCGAAGAAGTCACCCTCATGGACATTTCGCCCAGCCAGATGGTTTCCATCTCCGCTGCGCTGAT TCCGTTCCTTGAGCATGACGACGCCAACCGCGCACTCATGGGCTCCAACATGCAGCGTCAGGCAGTTCCGCTGCTGCGCA GCACCAAGCCCATCGTGGGTACCGGTATGGAAGCGGACGTGGCCCGCGACTCCGGTGCATGTATCATCGCAGAGGCAGAC GGTGTCGTGCGCTACGCCGACGCAGACCGCATCGTGGTTTCCTACGAAGGCGACCTGTACCCCAGGACGGGGGGCGTGCG TTCGTACGACCTGCAGAAATATCACAAGTCCAACCAGAGCTCGTGCTTCGGACAAAAGCCCCTCGTAAGCCGCGGTCAGG TTATCCGCAAAGGTGACGTGCTGGCTGACGGTCCCGGTATCGAAGACGGCGAACTGGCGCTGGGTAAAAACCTTGTGGTG GCTTTCATGCCCTGGTGCGGTTACAACTTCGAAGACTCCATCCTCATCTCCGAACGCTGCGTGAAGGAAGATGTCTTCAC CTCCGTGCACATCGAGGAATTTGAAGTTGTCGCCCGTGACACCAAGCTGGGCCCCGAAGAAATCACCCGCGATATTCCCA ACGTGGGCGAAGACATGCTGCGCAACCTTGACGGCAGCGGCATTATCCGCATCGGCGCCAATGTAAAGCCCGATGACATT CTGGTGGGCAAAATCACTCCCAAGGGTGAAACACAGCTTACGCCGGAAGAAAAACTGCTGCGCGCCATCTTCGGTGAAAA GGCCCGCGACGTGAAAAACACGTCGCTGAAGGTTCCGCCGGGAATCGAGGGTACTGTCATCGACGTCAAGCTGTTCAACC GCCGTTCCGGCGAAAAGGACGAGCGCACGCGCAACATCGAAGATTACGAGCTGGCACGGCTGGATCAGAAAGAGAAAGAT CACATCCGCGCACTGACCGAAACCACCCGTGAAAAGCTGGCACCCGTTGTGGTGGGCAAGCAGCTTGCTTACGGACTGGC CGGGCAGAAAAAAGGCGAAGTCATCGCCGAGGCAGGCCAGACCCTGACCGCGGAAATGCTTGAAGGTCTGCCGGTGAAGA AGCTCTCCGGCCTCTTCAAGAGCAAAGACACCAACGAGGCCGTACAGCAGGCGCTGGAATCATACGATCGTCAGATCGAG TTCATCAACGCCATGTACGAATCCAAGCGTGAAAAAGTGACCGAAGGCGACGACCTGCCCCCCGGCGTCATCAAGATGGC CAAAGTGCACATCGCCGTTAAGCGTAAGCTGAACGTGGGTGACAAAATGGCAGGCCGCCACGGTAACAAGGGTGTCGTAT CCTGCATACTGCCGCAGGAAGACATGCCCTTCTTCGCCGACGGCCGCCCCGTGGACATCGTGCTCAACCCGCTGGGCGTT CCCTCCCGTATGAACATCGGGCAGATTATGGAAACGCACCTGGGCTGGGCCGCAAAGGAAATGGGCCGCAAACTGGCGCT GATGCTGGAACACGGTCAGGATCTTGCGTCCGTGCGCGAACAGGTGAAAACAGTGTTCGCGTCCGATGCCATTTCCTCCG AGGTGGACAACATGGACGACGAGACCTTTGTCCGGTCCGTGCGCAGACTGCGCGACGGCATTGTGACCAAGACTCCCGTG TTCGACGGTGCCACCGAAGAGCAAATCTGGAGCTGGATGGAGCAGGCAGGGCTTGCCAACGACGGCAAAACCGAGCTGTA CGACGGCCGCACCGGTGTCCGGTTCCACAACCGTGTCACCACGGGTGTCATGTACATCCTTAAGCTGCACCACCTTGTTG ACGAAAAAATCCACGCCCGTTCCACCGGCCCCTACTCGCTTGTCACCCAGCAGCCGCTGGGCGGTAAGGCTCAGTTCGGC GGCCAGCGTCTGGGTGAAATGGAAGTGTGGGCACTGGAAGCATACGGTGCCGCATATCTGTTGCAGGAATTCCTCACGGT CAAGTCCGACGACGTGACCGGCCGAGTGAAGATGTACGAAAAGGTCGTGAAGGGTGACAACTTCCTTGAAGCAGGTCTGC CCGAGTCCTTCAACGTTCTGGTGAAGGAACTCATGTCTCTGGGCCTTGACGTCACCCTGCATCAGGAAGAAGGCAAAAAA CGCACCAAGCGTGCGGGAATGACCTTCGGCGACGGCACCAGCTACTAG Protein sequence : MGQLTKKFGKIEVTLPIPHLLNLQVDSYKKFLQEGAAALAPDEGLEGVFRSVFPIEDFNRTASLEYVSYEIGEPKYDQAE CISKGLTYEAPIRIKVRLVVYDVDEDSENRTIRDIKEQDIYFGTLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDAG KTHSSRKVLYSCRVIPMRGSWLDFDYDHKDILYVRIDRRRKMPATILFKAMGMSRSDILEYFYKKEYYTLEDDGRLMWEL DKDLYRKDVAYADVADGEGKVIAKAGKPYTKRSWRLMLEAGIPAVEVAPDYIAGMFLAEDIVDEATGEVLAEAADEITLD LIDRLRECSIKRVPVLHTKGSDTSSSIRDTLLLDKTADQEQARVEIYRRLRPSSPPTPEIASTFFENLFRNPDYYDLSPV GRYKLNQRLGLTTTQERVLTDEDILTAIRVLNHLKDTHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSL QEVSTLMPHDLINPKPVQAVLKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTRERAGFEVRDVHTSHYGRICPI ETPEGPNIGLIVSLTTYAKVNDFGFIETPYRVVRDGQVTDEVKYLDASSEHGEVVAQANARLDGDHRFVDEFVTTRVRGD VIMSPREEVTLMDISPSQMVSISAALIPFLEHDDANRALMGSNMQRQAVPLLRSTKPIVGTGMEADVARDSGACIIAEAD GVVRYADADRIVVSYEGDLYPRTGGVRSYDLQKYHKSNQSSCFGQKPLVSRGQVIRKGDVLADGPGIEDGELALGKNLVV AFMPWCGYNFEDSILISERCVKEDVFTSVHIEEFEVVARDTKLGPEEITRDIPNVGEDMLRNLDGSGIIRIGANVKPDDI LVGKITPKGETQLTPEEKLLRAIFGEKARDVKNTSLKVPPGIEGTVIDVKLFNRRSGEKDERTRNIEDYELARLDQKEKD HIRALTETTREKLAPVVVGKQLAYGLAGQKKGEVIAEAGQTLTAEMLEGLPVKKLSGLFKSKDTNEAVQQALESYDRQIE FINAMYESKREKVTEGDDLPPGVIKMAKVHIAVKRKLNVGDKMAGRHGNKGVVSCILPQEDMPFFADGRPVDIVLNPLGV PSRMNIGQIMETHLGWAAKEMGRKLALMLEHGQDLASVREQVKTVFASDAISSEVDNMDDETFVRSVRRLRDGIVTKTPV FDGATEEQIWSWMEQAGLANDGKTELYDGRTGVRFHNRVTTGVMYILKLHHLVDEKIHARSTGPYSLVTQQPLGGKAQFG GQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVKMYEKVVKGDNFLEAGLPESFNVLVKELMSLGLDVTLHQEEGKK RTKRAGMTFGDGTSY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 54 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 56 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 55 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 55 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 55 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 55 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 55 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 55 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 55 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 55 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 54 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 54 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 54 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 54 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 54 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 54 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 54 |
| Dde_2997 | YP_389486.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 54 |
