|
Name : Tcr_1331 (Tcr_1331) Accession : YP_391600.1 Strain : Thiomicrospira crunogena XCL-2 Genome accession: NC_007520 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1445465 - 1447342 bp Length : 1878 bp Strand : - Note : - DNA sequence : ATGTTTGAGTCAAGACAAAAAGTCATTAGTAATCAATACCCGGCGTGGAAATATCTGCTGCTGCTAATTGTGTTGGTATT AGGTGTTATTTATGCCGCACCGAATATTTTTGGAGACGATCCGGCTGTTCAGATTTCACCGGCAAAATCGGTTCAGTTTG ATGCCTCTACTGAAGACCTTGTGACGCAAACACTTCAGAAAGCGAGCCTAAAGCCAAAATCAATGGCGTATCAAAACGGT CAATTTCTGATTCGTTTCCATAATACAGATGAGCAAATGAAAGCCCGGAGCGCTCTGAAAGAAGTCATGGGTCGTCAAGC GGTGGTGGCCTTGAACCTAGCGCCGGCCACTCCTGATATCTTAAGAGCAGTCGGTGGTGAACCCATGTATTTAGGGTTGG ACCTACGCGGCGGTGTGCATTTCTTGATGGATGTCGACATGGAAGCTGCAGTGCAGAAAACGTATAACCGTTATGTTGAC GAAGTAAAAGGAGCTTTCAGAGAAGCTCGAATCCGTTACTTAAGCGTTTCTTATGAAACCGATCATTTAATGATTAAGTT TCGGGACGCTAAAAGTGTTTCCGCTGCGCAAGCAGAAATGGAAAAACAATTTCCGGGCGAATTTAACTTAGCGCCAGTGG ATGGGCAGAATGCATTAGAACTTCGCTTACAGCCTAAAACGATTGAAGAAGCGAAAACCTATGCTTTGAAGCAGAATATC ACCACCTTGCGTAATCGTATTAACGAATTAGGTGTGGCAGAGCCGGTTATTCAACAGCAAGGGGATCGTCGTATTGTGGT TCAGTTGCCAGGTGTGCAAGACACAGCCAAAGCAAAAGAAATCTTAGGGGCAACCGCAACACTGGAATTCAGACTGGTTG AAGAACGTGGCGATGCTTACCGTGCTGAAAAAACGGGTTATGCACCGAATGGATCGCGTTTATACCACTTCCGAGATGGT CGTCCTATCTTATTGAAACGCAGCATTATCGTCAGTGGTGACAACGTCATTAATGCTCAGTCCGGGATTGAAACGGAATC GGGTTCTGCTCAAGTCACCGTCACACTTGATGGCGCGGGTGGGCGTAAGATGCTGGCAACCACTAAGGAAAATATCGGCC ATCGTATGGCGGTGGTTTACATTGAGAATCGCGTTGAAACCATTGAAAAAAATGGTGAAAAAGTTAAAAAACGTATTACC ACTAAAGACGTGATCAATGCCGCGGTGATTCGTGGGCAGTTTGCTAACCGGTTCCAAATTACCGGGTTAGACAGCCCGCA AGAAGCACAAGACTTGGCATTGCTACTGCGTGCTGGGGCACTGGCGGCACCAATGGAAATTGTTGAAGAAAGAACCGTTG GGCCAAGCCTTGGGCAAGACAACATCAACCAAGGGATGATGTCGGTTATTGTCGGCTTCTTATTGGTGTTGGTGATTATG GTTTGGCGTTATAAAACGCTCGGCATGATTGCCAATATGGCGTTAACGTTGAATCTGATTCTGATTGTCGCGGTGTTGTC CTTGTTACAAGCCACATTGACCTTACCGGGGATTGCCGGGATCGTTCTCACCGTAGGGATGGCGGTGGACGCGAATGTGC TCATTTTTGAGCGTATCCGTGAAGAACTAAGAACGTCATCCGTTCAATCGGCCATCAATGCCGGTTATGAAAAAGCATTC GTAACAATTGCCGATGCCAACATCACAACCTTGTTGGCGGCACTGGTATTATTCAGTTTCGGAACAGGCCCGATCAAAGG CTTTGCCATTACGTTATCGATCGGGATTATTACTTCTATGTTTACAGCCATCTTGGGGACAAGAGCAATTGTGAATGCGC TCTACGGCAATAAGCCGGTAGAAAAGTTATCGGTTTAG Protein sequence : MFESRQKVISNQYPAWKYLLLLIVLVLGVIYAAPNIFGDDPAVQISPAKSVQFDASTEDLVTQTLQKASLKPKSMAYQNG QFLIRFHNTDEQMKARSALKEVMGRQAVVALNLAPATPDILRAVGGEPMYLGLDLRGGVHFLMDVDMEAAVQKTYNRYVD EVKGAFREARIRYLSVSYETDHLMIKFRDAKSVSAAQAEMEKQFPGEFNLAPVDGQNALELRLQPKTIEEAKTYALKQNI TTLRNRINELGVAEPVIQQQGDRRIVVQLPGVQDTAKAKEILGATATLEFRLVEERGDAYRAEKTGYAPNGSRLYHFRDG RPILLKRSIIVSGDNVINAQSGIETESGSAQVTVTLDGAGGRKMLATTKENIGHRMAVVYIENRVETIEKNGEKVKKRIT TKDVINAAVIRGQFANRFQITGLDSPQEAQDLALLLRAGALAAPMEIVEERTVGPSLGQDNINQGMMSVIVGFLLVLVIM VWRYKTLGMIANMALTLNLILIVAVLSLLQATLTLPGIAGIVLTVGMAVDANVLIFERIREELRTSSVQSAINAGYEKAF VTIADANITTLLAALVLFSFGTGPIKGFAITLSIGIITSMFTAILGTRAIVNALYGNKPVEKLSV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 7e-114 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-113 | 47 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-113 | 46 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-113 | 46 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-113 | 46 |
