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Name : Tcr_0288 (Tcr_0288) Accession : YP_390558.1 Strain : Thiomicrospira crunogena XCL-2 Genome accession: NC_007520 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 333651 - 337709 bp Length : 4059 bp Strand : + Note : - DNA sequence : ATGACCTATTCTTTAACTGAAAAGAAACGTATTCGTAAAGATTTTGCGACACGATCTTCAATTCTTGAAGTTCCTTATCT TCTTTCTCTCCAGAAAGAATCTTTCAAAGAGTTTTTACAAAAAGATAAAAAACCACTTGAGCGTGATCCGATAGGATTGC ATTCAGCATTTTCATCCGTTTTTCCAATTCATGGTGTTGCTGGAACAGCAGATCTTGAGTACGTCAGCTATACGATGGGT CAGCCAGAGTTTGACGTTAAGGAATGTAAGCAACGTGGTGTAACGTATTCATCTCCTTTACGTGTCAAGATGCGTCTGGT TTTGTTTGATAAGGATGCGCCGGCTGGAAAGCGTCCGGTTAAGGATGTTAAAGAACAAGAGGTGTATCTAGGCGATGTCC CTTTGATGACAGAGAATGGTACTTTTGTTATCAACGGAACTGAGCGTGTTATTGTGACACAGCTTCATCGTTCTCCAGGT GTGATTTTTGACAGTGATAAAGGGAAGTCGCATTCGTCTGGTAAAGTGTTGTTCAATGCCCGAATTATTCCTTATCGTGG GTCTTGGTTGGATTTTGAATTTGATCATAATGACTGTGTGTTTGTTCGTATTGACCGTCGTCGTAAACTCCCAGTCTCGA TTATTTTCAGAGCCATGGGGTATAGTTCTGAAGAGATTCTAGATACGTTTTTCGATCATACGCATATTTCATATAAAAAA GGTGCATTTGTTATGCAATTGGTTCCAAGCCAATTGAAAGGACAAACGGCTGCGTTTGATATTGCTGACGGCGATAAAGT GATTATTAAGGCCGGCAAGAAAATTACAGCTCGTAATATCAAACAATTGCAAGAAGCCAAAGTTGATAGCGTTGTTGTTC CAGAAGAGTATCTTTTAGGGAAAGTGTTGTCTTCAGGGATTACGAATGAAGAAACTGGTGAGTTAGTTGCTCGTTCGAAC GAAGTGATTGCCAGTGACTTGATTGAAACAATGAAGTCAATTAAGGATTTGTCTTTCCGTATTCTGTTTATTGACGATTT AGAAAATGGATCTTATATCTCAGATACGTTGAACTTAGATACAACAACCTCACAGCTTGAAGCTCAAATTGAAATTTATC GTATGATGCGCCCTGGTGAGCCACCAACGAAAGAATCATCAGAGGCATTGTTTAACAGTTTGTTCTTTGATGAAGCGCGT TATGACTTGTCTTCTGTTGGTCGAATGAAGTTGAACAGACGCTTAGGACGCAAAGACAATGAAGGCAGCTTGGTGCTTGA AAACCAGGATGTTGTAGACGTGGTTAAAGAGTTACTGAATATCCGTAATGGTTTAAGCACGATTGATGATATTGATACAC TAGGTAACAGACGTATTCGTGCTGTTGGTGAAATGGCTGAAAATGCTTTCCGAGTAGGTTTAGTTCGCGTAGAAAGAGCC GTTAAAGAACGTCTAAATCAAGCGGAAACAGATGGACTGTTGCCACAGGATTTGATTAATGCGAAGCCTGTTTCAGCGGC TATTAAAGAATTTTTTGGTTCAAGTCAGCTGTCACAGTTTATGGATCAGGTGAATCCTTTATCGGAAGTCACACATAAGC GACGTGTGTCAGCCTTGGGGCCAGGCGGTTTGACGCGTGAGCGTGCAGGTTTTGAAGTACGTGATGTGCATCCAACGCAT TATGGTCGTGTGTGCCCAATTGAAACGCCTGAAGGTCCAAACATTGGGTTGATTAATACATTAGCCATTTATGCTAAAAC TAATAAATATGGTTTCTTAGAGACACCGTATCGAAAAGTTATTGATGGTCAGGTGACTGAAGAAGTTGAATATGTTTCGG CCATTGATGAAGCACAGTTTGTGATTGCACAAGCAAGTGCTGCAATGGATTCAGATAATAAGTTGCTTGATGAGCTTGTG ACAGCAAGACATAAAAATGAAACTATTTTGGCATCTTCTCAAGATATCGACTATATGGATGTCTCACCAAAACAGATCGT TTCTGTCGCCGCTTCTTTGATCCCATTCCTTGAGCATGATGATGCTAACCGTGCCTTGATGGGCTCAAACATGCAGCGTC AAGCCGTTCCAACATTGCGAGCGGATAAACCGTTAGTCGGGACGGGAATTGAAAAAACAGTTGCGATTGACTCAGGTGTA ACCGTTATTGCTTTACGTGGTGGAGAAATTGTTTCTTCCGATTCTGCTCGTATAGTGGTCCGTGCAAACCAAGAAGAAAT TGCTGAAGGTGAAACTGGGGTTGATATTTATAACTTGATTAAATATCAGCGTTCAAACCAGAACACGTGTATCAACCAGA AGCCGATTGTAAAAGCAGGCGATGTCGTATCACGTGGTGATGTATTGGCAGATGGCCCTTCAACAGATTTAGGTGAGTTG GCCATTGGTCAAAATATGCGTATCGCGTTTATGCCATGGAATGGTTACAACTTTGAGGATTCGATCTTAGTTTCTGAAAG AGTGGTACAAGAAGATCGTTACACAACAATTCATATTGAAGAATTGACTTGTCTTGCTCGTGATACAAAATTAGGGCCTG AAGAAGTAACGTCAGATATTCCAAACGTTGGTGAAGCGGCACTATCAAGATTAGATGAATCTGGGATTGTTTACGTCGGT GCGGAAGTCAAACAAGGCGATATCTTAGTTGGAAAAGTCACGCCAAAAGGTGAGACTCAGTTAACTCCGGAAGAGAAACT TCTGCGTGCGATTTTTGGTGAAAAAGCATCGGATGTAAAGGATACATCATTACGCGTCAGTAAAGGGGTGGAAGGAACCG TTATTGATGTTCAGGTCTTTACGCGCGAAGGTGTTAAGAAAGATGCACGTGCCTTGGCAATTCAAGAAGATGAATTGCAA AAAGTTAGAAAAGACATTGATGAGCAATATAAGATTCTTGAAGAAGACACAATTGATCGTATCCAGCCAATGCTGATTGG TCAAAAATTAGTGGATGGAACTGAAATTACAGCAGACTTCCTAGCTTCTCAAGACTCTAGTAAATGGTTCGGGTTGAATG TTGCTGACGATGCACTGTCTTCACATTTAGAGAGCCTGGAAAAGCAACTTGTAGCTAAGAAAGAAGAGCTAAATGGTGTC TTTGAAGAGAAGAAGAAGAAGTTAACTCAGGGTGATGATCTGCAGCCAGGTGTTTCGAAGATGGTTAAGGTTTATGTGGC GGTTAAACGTCGTATTCAACCGGGTGATAAGATGGCTGGGCGCCATGGTAACAAAGGTGTTATTTCACGCATTTGTCCAG TTGAAGATATGCCATATGACGAGACGGGTCGACCTGTAGATATCTGTTTGAATCCATTAGGGGTTCCATCTCGTATGAAT GTTGGACAGATTCTAGAAACGCATCTTGGGCTTGCAGCTGAAGGACTTGGTGCAAAAATTAATGCCATGCTTGAACAGCA AGCCGATATTAAAGAGCTTAAATCTTTCTTGCATAAAATTTATAACGAAACTCAAGGTCAAAAAGTAGACTTTGATTCAT TGACTGATGCAGAAATTATTGAGTTGGCGGGTAACCTTCGTAAAGGGGTTCCAATGGCTTCACCTGTATTTGATGGTGCA TCTGAAGATGAGATTAAAGCGTTATTAAGACTTGCAGACCTTCCTGAGTCGGGTCAAATGAAACTTTATGATGGTATCAG CGGGGAAGAGTTTGATCGTCCAGTAACCGTTGGTTATATGTATTACTTGAAGCTTAATCACTTGGTTGATGACAAGATGC ATGCGCGTTCAACGGGCCCTTACAGCTTGGTTACGCAACAGCCGTTAGGTGGTAAGGCGCAATTTGGTGGTCAGCGATTT GGTGAGATGGAAGTGTGGGCTCTGGAAGCTTATGGGGCAGCATTTACACTACAAGAAATGCTGACAGTTAAGTCAGATGA TTTAAATGGTCGTACACGCATGTATAAAAATATTGTCGATGGCAATGAATACATGGAGCCGGGTATTCCAGAATCATTCA GTGTATTACGTAAAGAAATTCGTGCCTTGGGTATTGATATTGAGTTGGAGCAAGAATAA Protein sequence : MTYSLTEKKRIRKDFATRSSILEVPYLLSLQKESFKEFLQKDKKPLERDPIGLHSAFSSVFPIHGVAGTADLEYVSYTMG QPEFDVKECKQRGVTYSSPLRVKMRLVLFDKDAPAGKRPVKDVKEQEVYLGDVPLMTENGTFVINGTERVIVTQLHRSPG VIFDSDKGKSHSSGKVLFNARIIPYRGSWLDFEFDHNDCVFVRIDRRRKLPVSIIFRAMGYSSEEILDTFFDHTHISYKK GAFVMQLVPSQLKGQTAAFDIADGDKVIIKAGKKITARNIKQLQEAKVDSVVVPEEYLLGKVLSSGITNEETGELVARSN EVIASDLIETMKSIKDLSFRILFIDDLENGSYISDTLNLDTTTSQLEAQIEIYRMMRPGEPPTKESSEALFNSLFFDEAR YDLSSVGRMKLNRRLGRKDNEGSLVLENQDVVDVVKELLNIRNGLSTIDDIDTLGNRRIRAVGEMAENAFRVGLVRVERA VKERLNQAETDGLLPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTH YGRVCPIETPEGPNIGLINTLAIYAKTNKYGFLETPYRKVIDGQVTEEVEYVSAIDEAQFVIAQASAAMDSDNKLLDELV TARHKNETILASSQDIDYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIEKTVAIDSGV TVIALRGGEIVSSDSARIVVRANQEEIAEGETGVDIYNLIKYQRSNQNTCINQKPIVKAGDVVSRGDVLADGPSTDLGEL AIGQNMRIAFMPWNGYNFEDSILVSERVVQEDRYTTIHIEELTCLARDTKLGPEEVTSDIPNVGEAALSRLDESGIVYVG AEVKQGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVSKGVEGTVIDVQVFTREGVKKDARALAIQEDELQ KVRKDIDEQYKILEEDTIDRIQPMLIGQKLVDGTEITADFLASQDSSKWFGLNVADDALSSHLESLEKQLVAKKEELNGV FEEKKKKLTQGDDLQPGVSKMVKVYVAVKRRIQPGDKMAGRHGNKGVISRICPVEDMPYDETGRPVDICLNPLGVPSRMN VGQILETHLGLAAEGLGAKINAMLEQQADIKELKSFLHKIYNETQGQKVDFDSLTDAEIIELAGNLRKGVPMASPVFDGA SEDEIKALLRLADLPESGQMKLYDGISGEEFDRPVTVGYMYYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRF GEMEVWALEAYGAAFTLQEMLTVKSDDLNGRTRMYKNIVDGNEYMEPGIPESFSVLRKEIRALGIDIELEQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 66 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 69 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 67 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 67 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 67 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 67 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 67 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 67 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 67 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 66 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 66 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 66 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 66 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 66 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 66 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 64 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 62 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 44 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 44 |
| Tcr_0288 | YP_390558.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 3e-180 | 42 |
