Gene Information

Name : Synpcc7942_1421 (Synpcc7942_1421)
Accession : YP_400438.1
Strain : Synechococcus elongatus PCC 7942
Genome accession: NC_007604
Putative virulence/resistance : Virulence
Product : carboxysome assembly protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 1475239 - 1475547 bp
Length : 309 bp
Strand : +
Note : -

DNA sequence : 
ATGCCTATTGCGGTTGGAATGATCGAGACCCTGGGCTTCCCGGCTGTTGTGGAAGCAGCTGACGCGATGGTCAAAGCAGC
GCGTGTCACGCTGGTTGGCTATGAGAAGATTGGCAGCGGCCGCGTCACTGTCATTGTCCGGGGAGACGTTTCGGAAGTTC
AAGCTTCTGTCTCTGCGGGTCTCGATTCGGCGAAACGGGTTGCCGGTGGTGAAGTGCTGTCGCACCACATCATTGCGCGT
CCCCACGAGAACTTGGAATACGTTCTCCCGATTCGCTACACCGAAGCTGTTGAACAATTCCGCATGTAA

Protein sequence : 
MPIAVGMIETLGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVSAGLDSAKRVAGGEVLSHHIIAR
PHENLEYVLPIRYTEAVEQFRM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 3e-16 55
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 4e-17 54
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 5e-16 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Synpcc7942_1421 YP_400438.1 carboxysome assembly protein VFG1598 Protein 1e-16 55
Synpcc7942_1421 YP_400438.1 carboxysome assembly protein VFG1596 Protein 2e-17 54
Synpcc7942_1421 YP_400438.1 carboxysome assembly protein VFG1597 Protein 2e-16 51