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Name : ipgD (SDY_P171) Accession : YP_406172.1 Strain : Genome accession: NC_007607 Putative virulence/resistance : Virulence Product : IpgD Function : - COG functional category : - COG ID : - EC number : - Position : 138455 - 140071 bp Length : 1617 bp Strand : + Note : secreted by the Mxi-Spa machinery, modulates entry of bacteria into epithelial cells DNA sequence : ATGCACATAACTAATTTGGGATTGCATCAGGTTTCATTTCAAAGCGGAGATTCCTATAAAGGCGCAGAAGAAACCGGAAA CCAAAAAAGTGTAAGCGTGATTTCATATCAAAGAGTTAAAAATGGAGAGAGAAATAAGGGGGTCGAAGCGCTTAATCGAT TATATTTACAGAACCAAACAAGCTTAACAGGGAAAGGCCTTTTGTTTGCGCGTGACAGAGCTGCAGTTTTTTACGAGGCA ATAAAGTTGGCAGGTGGTGATACGTCAAAAATTAAAGCCATGATGGAACAATTAGATACCTATAAACTTGGTGAAGTTGA TAAAAGAAATATTAATGAGCTTAATAAAGTAATAAGTGAAGAGATAAGAGCACAGCTAGGCATTAAAAATAAAAAGGAAT TGCAATCGGAAATAAAACAAATATTTACTAATCATTTAAATAATAAGAATTGGGAACCGATCAACAAAAATATTAATTAT CATGGGAAAAATTATGGTTTTCAATTAACACCCGCCTCTCATATGAAGATAGGGAATAAAAATATATTTGTCAAAGAGTA TAATGGAAAAGGAATTTGTTGTGCTTCTACTAGAGAGAGTCAGCATATTGCGAATATGTGGCTTTCAAAAGTGGTGGATG ACGAGGGGAAGGAAATTTTTTCGGGTATCAGACATGGAGTTATATCAGCCTATGGATTGAAAAAAAACTCATCTGAAAGA GCTGTTGCTGCTCGTAATAAAGCTGAGGAGTTAGCAAGCGCAGCATTATATAGCAGACGAGAATTATTATCACAGGCTTT GTCTGGTAAAACAGTAGATTTAAAGATTGTTTCGACTTCTCTTCTGACGCCGACCAGTTTAACCGGGGGAGAGGAGAGTA TGTTAAAAGATCAGGTAAAGGCATTAAAAGGGTTAAACTCTAAAAGGGGGGAACCAACGAAATTATTAATTCGGAATAGT GATGGTCTTCTGCAAGAAGTAAACGTTAATCTAAAAGTGGTGACATTTAACTTTGGTGTAAATGAATTAGCGCTAAAAAT GGGCTTAGGCTGGAGGAATGTTGACAAGCTTAATGGTGAATCAATATGTTCTTTGTTGGGGGATAATTTCCTCAAAAATG GTGTGATTGGAGGTTGGGCAGCAGAAGCTATAGAAAAAAATCCATCATGTAAGAATGATGTGATATATCTGGCTAACCAG ATAAAAGAGATTCTAAACAAGAAGTTACAAAAAAATGATAATGGAGAGCCGTATAAATTGTCACAAAGAATGGCGCTATT GGCTTATACTATAGGTGCTGTACCTTGCTGGAATTGTAAGAGTGGGAAGGACAGAACAGGTATGCAGGATGCTGAAATTA AAAGAGAAATAATAAGAAAACATGAAACAGGGCAGTTTTCTCAATTAAATAGTAAATTATCCTCAGAAGAGAAAAGATTA TTTTCTACTATTCTAATGAATAGTGGTAATATGGAAATCCAAGAGATGAATACTGGTGTGCCTGGAAATAAAGTTATGAA AAAATTACCGCTATCTTCGTTAGAGCTGTCTTATGCTGAAAGAATAGGGGACCCCAAAATATGGAATATGGTGAAAGGGT ATTCGTCATTTGTATAA Protein sequence : MHITNLGLHQVSFQSGDSYKGAEETGNQKSVSVISYQRVKNGERNKGVEALNRLYLQNQTSLTGKGLLFARDRAAVFYEA IKLAGGDTSKIKAMMEQLDTYKLGEVDKRNINELNKVISEEIRAQLGIKNKKELQSEIKQIFTNHLNNKNWEPINKNINY HGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESQHIANMWLSKVVDDEGKEIFSGIRHGVISAYGLKKNSSER AVAARNKAEELASAALYSRRELLSQALSGKTVDLKIVSTSLLTPTSLTGGEESMLKDQVKALKGLNSKRGEPTKLLIRNS DGLLQEVNVNLKVVTFNFGVNELALKMGLGWRNVDKLNGESICSLLGDNFLKNGVIGGWAAEAIEKNPSCKNDVIYLANQ IKEILNKKLQKNDNGEPYKLSQRMALLAYTIGAVPCWNCKSGKDRTGMQDAEIKREIIRKHETGQFSQLNSKLSSEEKRL FSTILMNSGNMEIQEMNTGVPGNKVMKKLPLSSLELSYAERIGDPKIWNMVKGYSSFV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sopB | YP_216030.1 | outer protein | Virulence | SPI-5 | Protein | 3e-80 | 47 |
| sopB | NP_460064.1 | secreted effector protein | Virulence | SPI-5 | Protein | 3e-80 | 47 |
| sigD | NP_455588.1 | cell invasion protein | Virulence | SPI-5 | Protein | 4e-79 | 47 |
| sopB | AAC33723.1 | SopB | Virulence | SPI-5 | Protein | 1e-78 | 47 |
| sopB | AAK27355.1 | SopB | Virulence | SPI-5 | Protein | 1e-77 | 46 |
| sopB | AAK27357.1 | SopB | Virulence | SPI-5 | Protein | 1e-82 | 46 |
| sopB | AAK27356.1 | SopB | Virulence | SPI-5 | Protein | 8e-78 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ipgD | YP_406172.1 | IpgD | VFG0992 | Protein | 0.0 | 95 |
| ipgD | YP_406172.1 | IpgD | VFG0465 | Protein | 1e-80 | 47 |
