|
Name : secD (Nmul_A2427) Accession : YP_413108.1 Strain : Nitrosospira multiformis ATCC 25196 Genome accession: NC_007614 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2764848 - 2766692 bp Length : 1845 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGCTATCCTGCCTGGAAATACCTCTTTATCGCGGTTTCGATACTGCTTGGTCTGCTCTATACCCTCCCGAATTT CTATGGAGAGTCGCCGGCGGTGCAGATTTCGCCCCTGAGGAATGCGGCCAAGGCTGATACCGGGTTGTTGAATCGCGTCG AAGAGGCACTTAAAAAAGCCGATCTCCCTACTACCGGCATGTTTCTGGAGGGGGGCAGCATCAAGGTACGCTTTGCCGAT ACCGATACGCAGATCAGGGCAAGGGACGCACTGCAGTCGCTGCTGGGCAATGGCTACATGGTGGCACTGAATCTCCTGCC CAATTCTCCCCAGTGGCTGACCAGTATAGGCGCACTGCCGATGTATCTCGGGCTCGATCTCCGCGGTGGCGTCCATTTTC TGCTGGAAGTGGATATGAAAGGCGCCCTCTCCAAAGCCCTTGACCGCTTCAGTTCCGATATCCGCGGCAGCTTGCGGGAG AAAAAAATTCCCTATGCAGGCCTCGACAAGCGCGGCTCGCTGATCATCGTCAAATTCCGCAATGCAGAATCGCGCGCGCA GGCAGAGGCGGAAATCAAAAAGAACTATCCTGACCTGGATTTACGGGAAGAGAATGTCAGCACCGAGTTCCATCTGGCGG CCACGTTGAGGCCGGAGGCACAGAAGCGCATTCAGGACGCCGCCGTACAGCAGAACATCACGACCCTGCGCAATCGTGTC AACGAGCTCGGTGTGGCTGAGCCTATCATTCAGCAGGCCGGAGCAGACCGGGTGGTAGTGCAACTGCCCGGTGTGCAGGA TACCGCCAAAGCCAAGGATATTCTGGGGCGCACCGCGACACTCGAAGTCCGCATGGTTGACGAGGAACACGACCTCAGCG CGGCACTGAGAGGGCAGATTCCCTTTGGCTCCGAGCTGTACAGCGAACGCGGAGGCGGGCCATTACTGGTAAAGAAACAG GTAGTGCTGACAGGTGACCGGATCAACGATGCGCAGCCGGGCTTCGACAATAATAACCAGCCCGCGGTGCACCTCAACCT GGACAACAGCGGAGCCCGCATTTTCCAGCAGCTTACCCGCGATAACGTCGGCAAGCGCATGGCCATTCTGCTGATCGAGA AAAACCAGGCCGAAGTGATCACCGCGCCGGTGATCCGGGAAGAAATCGGCGGTGGAAGGGTGCAGATCAGCGGCCGCATG ACTTCCGAGGAAGCGCGGGATGTGGCATTGCTGCTACGCGCGGGCGCGCTGGCTGCTCCCATGGATATCGTCGAGGAGCG AACCGTAGGCCCGAGCCTGGGTGCGGAAAACATCGAGAGCGGATTTAACTCCACGCTCTATGGCTTTGCCGCCATCGCCG TCTTCATGACCATCTATTATCTGGTATTCGGCTTCATCTCGGTATTGGCACTCGGGGTCAACCTGCTGCTGCTGGTCGGC CTGCTTTCGATTCTGCAGGCAACGCTCACGCTGCCCGGCATGGCTGCTATTGCGCTTACCCTGGGGATGGCCATTGACGC CAATGTGCTCATCAACGAACGCATACGCGATGAACTGAGAGAGGGCATGGCGCCGCAGGCGGCGATAAACGCTGGCTACG AGCGTGCCTGGGCGACCATTCTCGATTCCAACATCACTACCCTGATTGCGGGTATCGCTTTGTTTGCATTCGGCTCGGGC CCGATAAAGGGATTTGCAGTGGTGCTGTGCCTGGGTATCCTGACTTCTATGTTCAGCGCGGTGATGGTCTCGCGCGGATT CGTCAATCTGGTATACGGCAGCCGCCGCAAACTGGAGCGGGTTTCCATTGGGCAGGTGTGGAAGCCTGTGACCAACAAGC GCTGA Protein sequence : MNRYPAWKYLFIAVSILLGLLYTLPNFYGESPAVQISPLRNAAKADTGLLNRVEEALKKADLPTTGMFLEGGSIKVRFAD TDTQIRARDALQSLLGNGYMVALNLLPNSPQWLTSIGALPMYLGLDLRGGVHFLLEVDMKGALSKALDRFSSDIRGSLRE KKIPYAGLDKRGSLIIVKFRNAESRAQAEAEIKKNYPDLDLREENVSTEFHLAATLRPEAQKRIQDAAVQQNITTLRNRV NELGVAEPIIQQAGADRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEEHDLSAALRGQIPFGSELYSERGGGPLLVKKQ VVLTGDRINDAQPGFDNNNQPAVHLNLDNSGARIFQQLTRDNVGKRMAILLIEKNQAEVITAPVIREEIGGGRVQISGRM TSEEARDVALLLRAGALAAPMDIVEERTVGPSLGAENIESGFNSTLYGFAAIAVFMTIYYLVFGFISVLALGVNLLLLVG LLSILQATLTLPGMAAIALTLGMAIDANVLINERIRDELREGMAPQAAINAGYERAWATILDSNITTLIAGIALFAFGSG PIKGFAVVLCLGILTSMFSAVMVSRGFVNLVYGSRRKLERVSIGQVWKPVTNKR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 9e-105 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 9e-105 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 9e-105 | 43 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 4e-104 | 42 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-104 | 42 |
