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Name : secD (amb2514) Accession : YP_421877.1 Strain : Magnetospirillum magneticum AMB-1 Genome accession: NC_007626 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2695081 - 2696649 bp Length : 1569 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCATTTTCCAAAATGGAAGATCGCATTGGTGGCGATTGTGAGCCTGTTCGGCATCGTCTTCGCGGTGCCGAACCT GCTGTCCCGCGATCAGGCCGACCGTATGCCGCACTGGCTGCAGCCGGTCAGCCTGGGCCTGGACCTTCAGGGCGGGTCCT ATCTGCTGCTGGAGGTGGATACCGCCTATGTGTTCCGCGAACAGCTGACCTCGCTGGTGGAAGGCGTGCGCACCACGCTG CGCAAGGAAAAGATCAAGTACTCCGACCTGGGCGCCAGGGGCGATCAGGTCAGCGTGCGCATCATCGAGGCCGATGAGCG CGCCAAGGCCCGCGAATTTTTGCGCAAGATCGATGCCGAGGCGGCGATCGAGACCAGGGACGACGGTTCCATGGTGCTCA AATATTCCGAGCAGGCGGTCAAGGCCCGCAAGACCGCGGCCATCGAGCAATCGCTGGAGATCGTGCGCCGCCGTATCGAC GAGTTGGGCACCCGCGAGCCCTCGATCCAGCGTCAGGGGGAGGATCGCATCGTCGTCCAGTTGCCCGGCGTCAAGGACCC CGACCGCATCAAGGCTCTGCTAGGCAAGACCGCCAAGCTGACCTTCCACCTGCTCGACGATTCCACCGGCGCCGACGAAG CGCAGAAGGGCCGGGTGCCGCCCGGCTCCATGCTGCTGCCCTCCGCCGAGAAGGAGCGGGGCATGCCGGAATCCTACGTG GTGCGCAAGCGCATCGAGGTGGGCGGCGACATGCTGGTGGATTCCAAGGCCACCTACAGCGAAGGCCGCCCGGTGGTCAG CTTCCGCTTCAGCGCCGCCGGCGCCAAGAAGTTCGGCGATGCCACCCGCGAGAATGCCGGCAAGTTCCTGGCCATCGTGC TGGACGAGAAGGTGATCAGCGCACCGCGCATCAACGAGCCCATCCTGGGCGGTTCCGGCATCATCTCGGGCAGCTTCTCG GTGCAGCAGGCCCAGGATTTGTCCCTGCTGCTGCGTGCCGGCGCCTTGCCCGCGCCGCTGCAGGTTCTTGAAGAGCGCAC CGTCGGTCCCGATCTCGGCGCCGATTCCATCCAGGCCGGCGCCGTGGCCAGTCTGCTGGGCCTCGCCCTGGTGGTGGTGC TGATGATCATCGTCTATGGCTCGCTCGGCGCCCTTGCCGATCTCGCCATGGTGCTCAACCTGATTCTGCTGCTGGCCTCG CTGTCGGCCCTGGGGGCCACGCTGACCCTGCCGGGCATCGCCGGCATCGTGCTGACCATGGGCATGGCGGTGGATGCCAA CGTGCTGATCTACGAGCGCATGCGCGAAGAGCAGCGCAACGGCCGCTCCATCATGTCGGCTATTCAGGCCGGCTATGACC GCGCCTTCGGCACCATCTTCGACGCCCACGTCACCACCCTGGTGGCGGCGGCGTTGCTGTTCCAGTTCGGCTCGGGTCCC GTTCGTGGTTTCGCCGTTACCCTGACGCTGGGCCTGCTGGCCTCGCTGTTCACCGCTGTGCTGGTCAATCGCATCATGGT GGTGACCTGGGTGCGCTGGCGCCGCCTCAAGACCCTGCCGCTGGCTTAA Protein sequence : MNHFPKWKIALVAIVSLFGIVFAVPNLLSRDQADRMPHWLQPVSLGLDLQGGSYLLLEVDTAYVFREQLTSLVEGVRTTL RKEKIKYSDLGARGDQVSVRIIEADERAKAREFLRKIDAEAAIETRDDGSMVLKYSEQAVKARKTAAIEQSLEIVRRRID ELGTREPSIQRQGEDRIVVQLPGVKDPDRIKALLGKTAKLTFHLLDDSTGADEAQKGRVPPGSMLLPSAEKERGMPESYV VRKRIEVGGDMLVDSKATYSEGRPVVSFRFSAAGAKKFGDATRENAGKFLAIVLDEKVISAPRINEPILGGSGIISGSFS VQQAQDLSLLLRAGALPAPLQVLEERTVGPDLGADSIQAGAVASLLGLALVVVLMIIVYGSLGALADLAMVLNLILLLAS LSALGATLTLPGIAGIVLTMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVAAALLFQFGSGP VRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLKTLPLA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-46 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-46 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-46 | 41 |
