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Name : secD (HCH_04467) Accession : YP_435596.1 Strain : Hahella chejuensis KCTC 2396 Genome accession: NC_007645 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 4596462 - 4598324 bp Length : 1863 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTCAACAAATACCCACTTTGGAAAAATCTGCTCGTTGTCATAGTGCTGATGATGGGCTTTATTTACGCCTTACCGAA TTTATATCCTGATGACTACGCTTTGCAGATAAGCGGATCTCGCGGCTCCATTGAGGTTGACGAGAGCGTGTTGAAAAAAG CCAAAGACGCCCTGGATGAAGCGGGCATTGCATACGGCGAAGCGAAAGTCGGCGAGAAGAACATCATCATCCGCTTTGCG GACAACGACACTCAGTTGGACGCTCAGCCTCACGTCAAGAGCGCTCTCGGCAATGACTATGTTGTGGCGTTGAACCTGGC TCCGACAACGCCCGCATGGTTATCCAATTTGGGCGCCGCCCCGATGAAGCTGGGGTTGGACCTGCGTGGAGGGGTTCACT TCCTTATGGAGGTGGATTTGGCGAAAGCGGTCGCCACGACAATGGAAATTACCCAAGGCGATATTAAGACCAAGTTGAGA GAAGAAGGGTTGCGTTATAAGTCGGTGGATATTCTGACTCCCAGGCAGATTTCCGTAGGCTTCCGGGACGAAGATGACCG TGATAGCGCCTTGTCTCTGGCGCGCCGTGAGTTTGACGACTTTTTGGCGGAAAGCGCTGAAGAGAGCGGCTTGTTTATGG TGAAGCTGACCCTGCTGGAAAGTCGGGCGAAAGAAATCGAAGACTACGCCATTTCCCAGAATTTGAGCACCCTGCGTAAC CGGGTCAACGAACTGGGCGTCGCCGAACCTTTGGTTCAGCGTCAAGGGCGGGGACGTATCGTTGTGGAGTTGCCAGGCGT GCAAGACACGGCCGAAGCCAAGCGTATTCTGGGGTCTACCGCTAACCTGGAGTTCCGTCTTGAGGCGCGACCAGACGCTT CGGCAGGATCGATTGAAAAGTTTGAATTCCGTTCCGAGCCCCGTACGGCAAGTCTGGAGCGCGACATTATTATTACTGGC GGCAGCGTCGCCAATGCGCAGCAATCCTTTGATGAGAATGGTCGCCCTGAAGTAAACATCAAGCTGGACTCCCTGGGCGG CAACAAAATGTTCCATGTCACCAAGGATGCTGTGCAGCGCAACATGGGCGTACTCTTTGTTGAGTACAAAGAAGAAGTAG ACGCCAAGTCTACGAACGGTCAGCCCAAGAAGCGCCGTTATGTAGAAAAGAAAATCATCAGTCTCGCCACTATCCAGTCG CCGTTAGGAAACAGTTTCCGTATAACGGGGCTTGACTCGGTGTTCGAAGCCAAGGAATTGGCTTTATTGTTGCGTTCCGG CGCATTGGCGGCGCCCATCTATTTTGTCGAGGAGCGTACCGTCGGGCCTAGTCTGGGGCTTGAGAATATCAAAGACGGCG CCACTTCCGTCGCTATTGGTTTTGTGCTGGTCATGCTGTTTATGATCGTGTACTACCGCGTGTTCGGAATTGTCGCCAAC ATTGCTTTGGCGGCTAACGTCTTTATTCTAATAGCAGTTATGTCCTTAATGTCGGCCACGCTGACTCTGCCGGGTATCGC CGGTATTGTATTGACGGTGGGGATGGCGGTTGACGCCAACGTGTTGATCTACGAGCGGATTCGTGAGGAATTGCGTAATG GTCTGCCGCCTCAGTCGGCGATTCATGCAGGTTACGATCGCGCATTCGTGTCTATTTTTGACGCCAACGTGACGACATTG ATTGCGGCGTTGATCCTGTTCGCGATCGGCACTGGCCCGGTTAAAGGTTTCGCAGTGACGCTGTCTATCGGTATTCTGAC CTCCATGTTTACCGCCATTACCGTGACTCGCGCGGTAGTCAATATGATATACGGCGGTCGCAATGTCGGGAGTTTGTCCA TTGGCGGCGTCAAGCAAGGTTAA Protein sequence : MLNKYPLWKNLLVVIVLMMGFIYALPNLYPDDYALQISGSRGSIEVDESVLKKAKDALDEAGIAYGEAKVGEKNIIIRFA DNDTQLDAQPHVKSALGNDYVVALNLAPTTPAWLSNLGAAPMKLGLDLRGGVHFLMEVDLAKAVATTMEITQGDIKTKLR EEGLRYKSVDILTPRQISVGFRDEDDRDSALSLARREFDDFLAESAEESGLFMVKLTLLESRAKEIEDYAISQNLSTLRN RVNELGVAEPLVQRQGRGRIVVELPGVQDTAEAKRILGSTANLEFRLEARPDASAGSIEKFEFRSEPRTASLERDIIITG GSVANAQQSFDENGRPEVNIKLDSLGGNKMFHVTKDAVQRNMGVLFVEYKEEVDAKSTNGQPKKRRYVEKKIISLATIQS PLGNSFRITGLDSVFEAKELALLLRSGALAAPIYFVEERTVGPSLGLENIKDGATSVAIGFVLVMLFMIVYYRVFGIVAN IALAANVFILIAVMSLMSATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLPPQSAIHAGYDRAFVSIFDANVTTL IAALILFAIGTGPVKGFAVTLSIGILTSMFTAITVTRAVVNMIYGGRNVGSLSIGGVKQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 8e-159 | 57 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 8e-159 | 57 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 8e-159 | 57 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-159 | 57 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-159 | 57 |
