Gene Information

Name : BTH_II1383 (BTH_II1383)
Accession : YP_439579.1
Strain :
Genome accession: NC_007650
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 1634528 - 1635037 bp
Length : 510 bp
Strand : -
Note : identified by match to protein family HMM PF04542

DNA sequence : 
ATGCCGGGCAACACTCTGCGTCTGCAGCGGGAGATCGCTGCGCTCTACACCGGTCATCGCGGCTGGCTGCACGGCTGGCT
GCAGAAGAAGCTCGGTTGCGGCGAGCGCGCGGCCGATCTCGTCCACGACACGTTCATCCGCCTGCTCGCGCGCGACGAGC
CGATCGACGCGGCCGAGCCGCGCGCGTTCCTGACGACCGTCGCGCAACGCGTGCTGTTCAACCACTGGCGGCGCGAGCGG
CTCGAGCGCGCCTATCTCGACGCGCTCGCGCGGCTGCCGGAGGCGGTCGCGCCGTCGCCGGAGACGCGCGCGATCCTGTT
CGAGACGCTCGTCGAGATCGACCGGATGCTCGACGGGCTGCCCGCCGCGGTCAGGCGTGCGTTCCTGCTCGCGCAGCTCG
ACGGGATGACGCACGCGCAGATCGCGGCCGAGCTTCGCGTGTCGCTCGCGACCGTCAAGCGTTATCTGGTGAAGGCGGGC
GCGCAGTGCTACTTCGCGATCGCCGCATGA

Protein sequence : 
MPGNTLRLQREIAALYTGHRGWLHGWLQKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQRVLFNHWRRER
LERAYLDALARLPEAVAPSPETRAILFETLVEIDRMLDGLPAAVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAG
AQCYFAIAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 3e-33 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BTH_II1383 YP_439579.1 ECF subfamily RNA polymerase sigma factor VFG1049 Protein 1e-33 47