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Name : glcD (RHE_CH00808) Accession : YP_468346.1 Strain : Rhizobium etli CFN 42 Genome accession: NC_007761 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit D protein Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : 1.1.3.15 Position : 846404 - 847843 bp Length : 1440 bp Strand : + Note : similar to glcD (SMc00832) [Sinorhizobium meliloti] and AGR_C_1189p [Agrobacterium tumefaciens]; location:bacterial inner membrane Psort-Score: 0.2975; Similar to swissprot:Q92RS3 DNA sequence : ATGTCCGACGCCATTCCGTTTCTTGCCCCCCGTGCCGACGTGCTGGCGCGCCGCGCCGCGATCGTCGCCGATCTGACCGA TCTCCTGCCGCCGGAATGCCTGATCCATCAGGCGCGCGAGCTGGTGCCCTTCGAAACCGACGCTTTCGTTTCCTATCGCC GCCTGCCGCTCGCCGTCGCCCTGCCGCGCACCACGGCCGAGGTTTCGGCCGTCATGCGTTATTGTCACCGCTACGGCATT CCCGTCGTACCGCGCGGCGCCGGCACCTCGCTTTCGGGCGGCGCCATTCCGCAGGAGGATGCGGTCGTGCTCGGCCTGTC GAAGATGAACAGCATCCTCGAAATCGACCTGGTGAACCGTGTCGCCGTTGTTCAGGCGGGCGTCACCAATCTCAATATTT CGGAATCCGTCTCCGCCGACGGCTTCTTCTACGCGCCTGATCCGAGTTCGCAGCTCGCCTGCACGATCGGCGGCAATATC GGCATGAATTCCGGTGGCGCCCACTGCCTGAAATATGGCGTCACCACCAACAATCTGCTCGGCGTCCGAATGGTGCTGGT CGACGGCACGGTGATCGAGCTCGGCGGCAAGGCGCTGGATGCGGCGGGTTACGATCTGCTCGGTCTCGTCTGCGGCCATG AAGGCCAGCTCGGCATCGTCACCGAGGCGACCGTGCGCCTGATCGCCAAGCCCGAAGGTGCGCGCCCGGTGCTCTTCGGC TTCGAAAGCTCGGAAGAGGCGGGCGCCTGCGTCGCCGATGTCATCGCCGCCGGCATCATCCCCGTTGCGATCGAATTCAT GGACAAGCCGGCGATCGAGATCTGCGAGGCCTTTGCCCATGCCGGCTACCCCCTCGATGTCGGCGCACTCCTGATCGTCG AGGTCGAAGGATCGGAAGCGGAGATGGACGCCACGCTGAAGGACGTCGTCGAGATCGCCCGCCGCCACGGCGTCAAGACC GTGCGCGAATGCCAGTCGGCGACCGAAGCGGCGCTGATCTGGAAGGGCCGCAAATCCGCCTTCGGCGCCACCGGCCGCAT CGCCGACTACATCTGCATGGACGGCACGGTGCCGCTCAGCCAGCTGTCGCACGTGCTGAAGAGAACCGCCGAGATCGTCG ATCACTACGGGCTACGCGTCGCCAACGTCTTCCACGCCGGCGACGGCAACATGCATCCGCTGATCCTCTTCAACGCCAAT GATCCGCAGGATGCTGCCCGCGCCGAGGCCGCCGGCAACGATATCCTGAAGCTGTGTGTCGACGCCGGCGGCTGCCTCAC CGGCGAGCACGGTGTCGGCATCGAAAAGCGTGACCTGATGCGGCACCAGTATTCAGAGGCCGATCTCGCCCAGCAGATGG CGGTGCGCGCCGCCTTTGATCCCGGCTGGCTGCTCAATCCGTCGAAGGTCTTTCCGCTGGAAGGGCGCCCCGCCGCATGA Protein sequence : MSDAIPFLAPRADVLARRAAIVADLTDLLPPECLIHQARELVPFETDAFVSYRRLPLAVALPRTTAEVSAVMRYCHRYGI PVVPRGAGTSLSGGAIPQEDAVVLGLSKMNSILEIDLVNRVAVVQAGVTNLNISESVSADGFFYAPDPSSQLACTIGGNI GMNSGGAHCLKYGVTTNNLLGVRMVLVDGTVIELGGKALDAAGYDLLGLVCGHEGQLGIVTEATVRLIAKPEGARPVLFG FESSEEAGACVADVIAAGIIPVAIEFMDKPAIEICEAFAHAGYPLDVGALLIVEVEGSEAEMDATLKDVVEIARRHGVKT VRECQSATEAALIWKGRKSAFGATGRIADYICMDGTVPLSQLSHVLKRTAEIVDHYGLRVANVFHAGDGNMHPLILFNAN DPQDAARAEAAGNDILKLCVDAGGCLTGEHGVGIEKRDLMRHQYSEADLAQQMAVRAAFDPGWLLNPSKVFPLEGRPAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 4e-97 | 49 |
