Gene Information

Name : ccmK-2 (CYA_1612)
Accession : YP_475036.1
Strain : Synechococcus sp. JA-3-3Ab
Genome accession: NC_007775
Putative virulence/resistance : Virulence
Product : carbon dioxide concentrating mechanism protein CcmK
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 1617247 - 1617588 bp
Length : 342 bp
Strand : +
Note : identified by similarity to SP:Q03511; match to protein family HMM PF00936

DNA sequence : 
ATGGCTATTGCAGTCGGAATGATCGAAACCCTGGGCTTCCCGGCAGTGGTGGAAGCTGCCGACGCCATGGTAAAGGCCGC
GCGCGTCACCCTGGTGGGTTATGAAAAAATCAGCAGCGGGCGCGTCACCGTGATCGTACGGGGCGATGTCTCCGAGGTGC
AGGCCTCGGTGGCCGCCGGGATCGAGTCGGTGAAGCGGGTCAATGGCGGCCAGTTGCTCTCCTGGCACATCATCGCCCGT
CCCCACGAAAACCTAGAGTACGTGTTGCCCATTCGCTACACCGAGGATGTGGCTCAGTTCCGCGAAGGGGTCAACGCCAT
CCGTCCCTTCACCCGTCCCTAG

Protein sequence : 
MAIAVGMIETLGFPAVVEAADAMVKAARVTLVGYEKISSGRVTVIVRGDVSEVQASVAAGIESVKRVNGGQLLSWHIIAR
PHENLEYVLPIRYTEDVAQFREGVNAIRPFTRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-16 50
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-15 50
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 7e-16 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ccmK-2 YP_475036.1 carbon dioxide concentrating mechanism protein CcmK VFG1596 Protein 9e-17 50
ccmK-2 YP_475036.1 carbon dioxide concentrating mechanism protein CcmK VFG1598 Protein 8e-16 50
ccmK-2 YP_475036.1 carbon dioxide concentrating mechanism protein CcmK VFG1597 Protein 3e-16 48