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Name : glcD (CYA_2808) Accession : YP_476174.1 Strain : Synechococcus sp. JA-3-3Ab Genome accession: NC_007775 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit GlcD Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 2828098 - 2829564 bp Length : 1467 bp Strand : - Note : identified by match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387 DNA sequence : TTGCAAGCTGGCCTCACCTTCGATTGGCTCAAACTGAGGGCTGAGCTCAAAAAAATTCTCGATCCCCGGCGGGTGATCAG CAGGCCGGAGGAGCTGCTGGTTTACGAGTGCGACGGGCTGACCAGCTACCGGCAAAGGCCGGCTCTGGTGGTGTTGCCGC GCACCACGGAGGAGGTGGCGCAGGTGGTGAAGCTGTGCAGCCGCTACCAGGTGCCCTTCGTGGCGCGGGGATCCGGCACC GGCCTTTCGGGAGGGGCGCTGCCGCTGGAAAATAGCGTCGTCATCGCCACCACCCTGATGAAACAGATCCTGGAGATTGA CCTAGACAACCGCTGCATGGTGGTGCAGCCGGGAGTAATCAACGCCTGGATTACCCAAGCGGTGGCCGCCCAGGGCTACT TTTATGCGCCGGATCCCTCCAGCCAGTCGGTTTGCTCCATCGGCGGCAATGTGGCGGAAAACTCCGGCGGCGTCCACTGT CTCAAGTACGGGGTGACGGCCAACCACATCCTCGGCCTGACGGTGGTGCTGCCGGATGGGGAAGTGGTGCGCTGGGGGGG CAAGATCCCGGAGATGCCCGGCTACGACTGGGTGGGCCTGTTCGTCGGCTCCGAGGGCACTCTGGGCATTGCTACCGAGA TTACCCTGCGCTTGCTCAAGGCGCCGGCCCAGGTGCAGGTTTTGCTGGCGGATTTTGACAGCGTCGAGGCGGCAGGAGCC ACCGTTTCCGACATCATCGCCGCCGGGATCATCCCCGCCGGCCTGGAGATCATGGACAACTTCAGCATCAATGCTGTGGA GGATGTGGTGCAGTTGGGCTGCTACCCACGGGATGCGGCGGCCATCTTGCTGGTGGAGGTGGACGGCCTGGAGCTGGAGG TGGAGGAAGCCAGCCAGCAGGTAAAGGCCCTGTGCCTGAAAAACGGGGCGCGCCAGGTGCAAGTTGCCTCCAGCCCAGAA GAGCGGGCGCGTCTGTGGAAGGGGCGCAAGGCGGCCTTTGCCGCCATGGGCAAGCTCAGCCCCAACTACTACGTCCAGGA TGGGGTGATCCCCCGCAGCCAGCTAGCCTATGTCCTCAAAGAAATCGAGCGCCTCAGCCGCCAGTACGGCTACCCGGTGG CCAATGTGTTCCACGCCGGCGACGGCAACCTCCATCCGCTGATTCTCTACGACGAGTCGGTGCCGGGATCCCTGGAGCAG GTGGAGAAGCTGGGGGGCGAGATCCTCAAGCTCTGCGTGCGTCTGGGGGGCAGCATTTCTGGCGAGCACGGCATCGGGGC CGACAAGCGCTGCTACATGCTGGAGATGTTTACGCCCACAGACTTGGAGAGCATGCAGTGGGTGCGGCAGGTGTTCGACC CGCAGCGCCTCGCCAACCCCGACAAGATCCTTCCCACTCCCCGCACCTGCGGCGAGGCGGCCCACGCCCACCGGCAGCCG GAATGGCAAGGGATCCCGGTCTTCTAG Protein sequence : MQAGLTFDWLKLRAELKKILDPRRVISRPEELLVYECDGLTSYRQRPALVVLPRTTEEVAQVVKLCSRYQVPFVARGSGT GLSGGALPLENSVVIATTLMKQILEIDLDNRCMVVQPGVINAWITQAVAAQGYFYAPDPSSQSVCSIGGNVAENSGGVHC LKYGVTANHILGLTVVLPDGEVVRWGGKIPEMPGYDWVGLFVGSEGTLGIATEITLRLLKAPAQVQVLLADFDSVEAAGA TVSDIIAAGIIPAGLEIMDNFSINAVEDVVQLGCYPRDAAAILLVEVDGLELEVEEASQQVKALCLKNGARQVQVASSPE ERARLWKGRKAAFAAMGKLSPNYYVQDGVIPRSQLAYVLKEIERLSRQYGYPVANVFHAGDGNLHPLILYDESVPGSLEQ VEKLGGEILKLCVRLGGSISGEHGIGADKRCYMLEMFTPTDLESMQWVRQVFDPQRLANPDKILPTPRTCGEAAHAHRQP EWQGIPVF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 2e-108 | 54 |
