Gene Information

Name : ccmK-1 (CYB_1796)
Accession : YP_478016.1
Strain : Synechococcus sp. JA-2-3B'a(2-13)
Genome accession: NC_007776
Putative virulence/resistance : Virulence
Product : carbon dioxide concentrating mechanism protein CcmK
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 1884083 - 1884424 bp
Length : 342 bp
Strand : -
Note : identified by match to protein family HMM PF00936

DNA sequence : 
ATGGCTATTGCAGTTGGAATGATCGAAACCCTGGGCTTCCCGGCAGTGGTAGAAGCTGCCGATGCCATGGTCAAGGCCGC
CCGCGTTACCCTGGTGGGTTACGAGAAAATCAGCAGCGGTCGGGTCACCGTGATCGTGCGGGGGGATGTCTCGGAGGTGC
AAGCCTCGGTGGCTGCCGGCATTGACTCGGTGAAGCGGGTGAACGGCGGCCAGTTGTTGTCTTGGCACATTATCGCCCGT
CCCCACGAGAACCTGGAGTACGTGTTGCCCATTCGCTACACCGAGGATGTGGCTCAGTTCCGCGAAGGGGTAAATGCCAT
CCGTCCCTTCACCCGTCCCTGA

Protein sequence : 
MAIAVGMIETLGFPAVVEAADAMVKAARVTLVGYEKISSGRVTVIVRGDVSEVQASVAAGIDSVKRVNGGQLLSWHIIAR
PHENLEYVLPIRYTEDVAQFREGVNAIRPFTRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-16 49
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-15 49
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 8e-16 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ccmK-1 YP_478016.1 carbon dioxide concentrating mechanism protein CcmK VFG1596 Protein 1e-16 49
ccmK-1 YP_478016.1 carbon dioxide concentrating mechanism protein CcmK VFG1598 Protein 9e-16 49
ccmK-1 YP_478016.1 carbon dioxide concentrating mechanism protein CcmK VFG1597 Protein 3e-16 47