Gene Information

Name : ccmK-2 (CYB_1797)
Accession : YP_478017.1
Strain : Synechococcus sp. JA-2-3B'a(2-13)
Genome accession: NC_007776
Putative virulence/resistance : Virulence
Product : carbon dioxide concentrating mechanism protein CcmK
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 1884496 - 1884804 bp
Length : 309 bp
Strand : -
Note : identified by match to protein family HMM PF00936

DNA sequence : 
ATGCCTATTGCAGTTGGAATGATCGAAACCCGCGGGTTCCCGGCAGTGGTAGAAGCTGCCGACGCCATGGTCAAGGCAGC
CCGCGTTACCCTGGTGGGTTACGAGAAAATCGGCAGCGGTCGGGTCACCGTGATCGTGCGGGGGGATGTCTCGGAGGTGC
AAGCCTCGGTGGCTGCCGGTTTGGAGTCTGCCAAGCGGGTGAGCGGGGGTGAGATTCTCTCCCACCACATCATTGCCCGT
CCCCACGAGAACCTGGAGTTTGTGTTGCCCATCCGCTATACCGAGGCGGTAGAGCAGTTCCGCACCTAG

Protein sequence : 
MPIAVGMIETRGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVAAGLESAKRVSGGEILSHHIIAR
PHENLEFVLPIRYTEAVEQFRT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-17 55
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 5e-18 54
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 4e-17 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ccmK-2 YP_478017.1 carbon dioxide concentrating mechanism protein CcmK VFG1598 Protein 9e-18 55
ccmK-2 YP_478017.1 carbon dioxide concentrating mechanism protein CcmK VFG1596 Protein 2e-18 54
ccmK-2 YP_478017.1 carbon dioxide concentrating mechanism protein CcmK VFG1597 Protein 2e-17 51