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Name : secD (Rfer_3866) Accession : YP_525096.1 Strain : Rhodoferax ferrireducens T118 Genome accession: NC_007908 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 4316769 - 4318649 bp Length : 1881 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAATCGTTACCCAGTCTGGAAGTACGTGATCATCTTGATCGCGCTGGTGGTGGGGGTCGTGTACACCCTGCCCAATTT TTTTGGTGAAGCCCCGGCGGTGCAGGTGTCGGCGGTCAAGGTGGGCGTCAAGGTCGACAGCAGCACAAAAGTGCAAGTCG AAGCAGTCTTGCAGACCGCAGGCCTGGCCGCTGATGTGGTGACGCTGGACGGCAACTCGGTCAAAGCGCGCTTTGGCAAC ACTGAGACCCAACTCAAGGCCAAGGATGCGATTCAAAAAGCCTTGATTCCTGACCCGGCCAACCCCAACTACATAGTGGC GCTTAATTTGCTGTCGCGCTCCCCGACCTGGCTGACCGCTTTGCGCGCCTTTCCCATGTATCTGGGGCTGGATTTGCGGG GCGGCGTGCACTTCATGTTGCAGGTGGACATGCAAGCGGCGCTGACTAAAAAAGCTGAATCGTTGACCGGTGACATTCGA ACCAGCCTGCGCGAGAAAAATGTTCGCCACAGCGGCATCAACCGCAACGGCCAGACCATCGAAGTGCGTTTTCGCGATGC GCAAACGCTTGAAGCGGCCAAAGAGATCCTGCTGGATCAATTTGCCGACCTGCAATCGGTGGACGCGCTGGACGGCACCG ATTACAAACTGACGGCCTCCATCAAGCCCGTGGCGGCGCTACGGGTGCAGACCCAAGCGCTCAAGCAGAACATCACCACC TTGCACAACCGTATCAATGAGCTGGGTGTGTCTGAACCGGTCATCCAGCAGCAGGGCTTGGACCGGATTGTGGTGGAGTT GCCGGGTGTGCAGGACACCGCCAAGGCGAAAGATATTCTGGGGCGCACCGCCACCCTCGAAGTGCGCATGGTGGATGAAA GCAGTGAAGCGCGGGCGGCCGAGGGTGGTACGGCGGCGGTACCGTTTGGGTCCGAGCGCTTCCTGGAACGCAGTGGCCAG CCCGTGATCGTGAAAAAACAGGTGATTTTGACCGGTGAGAACTTGACCGATGCCCAGCCCGGTTTTGACAGCCAGACGCA AGAAGCCGTGGTCAACCTGACGCTGGACGCCAAGGGCGCGCGGATCTTTCGCGATGTCACGCGTGAAAGTGTCGGCAAGC GCATGGCGATTTTGCTGTTCGAGAAGGGCAAGGGCGAAGTGGTCACCGCGCCCGTGATTCGCTCGGAGATTGGCGGCGGA CGGGTGCAGATCTCGGGCCGCATGACCGCGATGGAAGCCACCGACACGGCCTTGCTGCTGCGCGCCGGCTCACTGGCCGC ACCGATGGAAATCATCGAAGAAACCACCATTGGCCCAAGTCTGGGTGCGGAGAATATTGCCAAGGGCTTTAACAGCGTCA CCTACGGCTTTGCGGCGGTCACGGTCTTCATGTGCGTCTACTACGTGCTGTTTGGCCTGTTTTCGAGTATCTCGCTGGCC GTCAATCTGCTGCTGCTGGTGGCGGTGCTGTCGATGCTGCAGGCCACCTTGACGCTACCGGGCATGGCCGCGATGGCGCT GGTGATCGGCATGGCGATTGATGCCAACGTGCTGATCAACGAGCGGGTGCGCGAAGAGTTGCGCAATGGCGCCTCGGCGC AGGCCGCCATCCACGCTGGCTATGACCGGGCCTGGGCCACGATTTTGGATTCCAATGTCACCACCTTGATTGTCGGGCTG GCCTTGTTGACGTTCGGTTCCGGTCCGGTGCGTGGCTTTGCGGTGGTGCACGTTCTTGGCATTCTGACCAGCATGTTCTC CGGCGTGTTCTTTTCCAGAGGCCTGGTCAATTTGTGGTACGGCCGGCAAAACAAGCTCAAGACGGTGTCCATTGGGACCA TCTGGCGCCCTGAACCCGATGCGCCGGTAGCCCCGAAATAA Protein sequence : MNRYPVWKYVIILIALVVGVVYTLPNFFGEAPAVQVSAVKVGVKVDSSTKVQVEAVLQTAGLAADVVTLDGNSVKARFGN TETQLKAKDAIQKALIPDPANPNYIVALNLLSRSPTWLTALRAFPMYLGLDLRGGVHFMLQVDMQAALTKKAESLTGDIR TSLREKNVRHSGINRNGQTIEVRFRDAQTLEAAKEILLDQFADLQSVDALDGTDYKLTASIKPVAALRVQTQALKQNITT LHNRINELGVSEPVIQQQGLDRIVVELPGVQDTAKAKDILGRTATLEVRMVDESSEARAAEGGTAAVPFGSERFLERSGQ PVIVKKQVILTGENLTDAQPGFDSQTQEAVVNLTLDAKGARIFRDVTRESVGKRMAILLFEKGKGEVVTAPVIRSEIGGG RVQISGRMTAMEATDTALLLRAGSLAAPMEIIEETTIGPSLGAENIAKGFNSVTYGFAAVTVFMCVYYVLFGLFSSISLA VNLLLLVAVLSMLQATLTLPGMAAMALVIGMAIDANVLINERVREELRNGASAQAAIHAGYDRAWATILDSNVTTLIVGL ALLTFGSGPVRGFAVVHVLGILTSMFSGVFFSRGLVNLWYGRQNKLKTVSIGTIWRPEPDAPVAPK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 8e-82 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 7e-82 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 7e-82 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 7e-82 | 41 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-82 | 41 |
