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Name : Sde_0924 (Sde_0924) Accession : YP_526398.1 Strain : Saccharophagus degradans 2-40 Genome accession: NC_007912 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1187680 - 1191765 bp Length : 4086 bp Strand : + Note : - DNA sequence : ATGGCTTACTCATATACTGAGAAAAAACGTATCCGAAAGGATTTTGGCAAGTTGCCAGACGTCATGGAAGTGCCATACCT TCTGGCGATTCAACTAGATTCCTACAGAAAATTTACGCAGGCTGATACCCCTTTCGATCAAAGAAAGGATATGGGCTTGC ACGCTGCATTTAAATCTATATTTCCAATAGTGAGCTATTCAGGTAATGCAGCACTTGAGTATGTCAGTTATGCCCTAGGT AAGCCCGTTTTTGACGTAAAAGAATGTGTTTTGCGTGGCGCGACCTATGCAGTGCCTTTACGCGTTAAAGTTCGTTTGAT TATCTACGATAAAGATTCGTCCAGTAAGGCGATCAAGGATATCAAAGAGCAAGAAGTCTACATGGGCGAAATTCCGCTTA TGACAGACAATGGTACATTCGTAGTGAATGGTACCGAGCGAGTAATTGTATCTCAGTTACACAGATCTCCTGGTGTGTTT TTCGAGCACGACAAAGGTAAGACCCACTCTTCGGGCAAGTTGCTCTACTCTGCACGCGTTATCCCTTACCGTGGCTCATG GTTAGACTTCGAGTTCGACCCTAAAGATCTAGTTTTCGTACGTATTGACCGTCGTCGTAAGTTGCCTGCGTCTATTTTGT TGCGCGCATTGGGCTATACCACCGAGCAAATGCTCGATATGTTCTACGAAACAAGCAAGTTCGGTCTTACCGAAACTGGT GAGTGCGTACTTGAATTGGTTCCATCGCGTTTGCGCGGTGATGTAACAACGTTTGAAATTAAAGATAAAGACGGCAATTT AATTGTTGAAGATGGCCGTCGTATTACTGCTCGTCATATTCGTCAGTTGGAAAAAGCTGGTGTAACCGAGCTAAGTGTTC CGCACGAATATATGGTTGGTCGCGCATTAGCGAAAGATATTATTAATGCGGAATCCGGCGAAGTTCTATTTGAATGTAAC ACCGAAATCACAGACGAAGTTCTTGCGGAGCTTGTTAAGTCTGGCGTTAAAGAATTTGAAACGTTGTACACCAACGAATT AGATTGCGGTCCGTTTATTTCTGACACTTTGCGCAGCGACCCTGCTCGCACTCAGCTTGAAGCGTTGGTAGAAATCTACC GCATGATGCGCCCGGGTGAGCCGCCAACAAAAGAGTCTGCAGAAACACTGTTCCAAAACTTGTTCTTCAGCTCTGAGCGC TATGACCTTTCTGCTGTTGGTCGAATGAAGTTCAACCGCCGTTTGGGTCGTGATTCAGAAGTTGGTTCTGGAACGCTATC TAATGAAGATATAGTTGATGTATTAAAAACGCTTATCGACATTCGCAACGGTAAAGGCGTGGTGGATGATATCGATCACC TCGGTAACCGTCGTGTACGTTCTGTTGGCGAAATGGCCGAGAACCAATTCCGTGTTGGTTTAGTTCGTGTAGAGCGCGCT GTTAAAGAGCGTCTATCTATGGCTGAAAGCGAAGGCTTAATGCCCCAAGATCTTATTAACGCTAAGCCTGTGGCTGCTGC TGTTAAAGAGTTCTTTGGCTCGAGTCAGCTATCTCAGTTCATGGATCAAAACAACCCACTGTCAGAAGTTACGCACAAAC GTCGTGTTTCCGCATTAGGCCCTGGTGGTTTGACGCGTGAGCGTGCAGGCTTTGAGGTGCGAGACGTACACCCGACTCAC TACGGTCGTGTATGTCCTATTGAAACACCTGAAGGTCCAAACATTGGTTTGATTAACTCGTTGGCTACCTATGCGCGTAC CAACAGTTACGGTTTCTTAGAAAGTCCTCACCGCAAGGTAGTTGACGGTAAAGTTACCGATGAAATCGAATACCTATCAG CTATTAACGAAGCTAAATTCGTAATTGCACAGGCATCTGCTGCGCAAAACGAAAATGGCGAATTAACAGAAGAGTTGGTA TCGGTACGATTCCAAAATGAATTTACCTTAAAAGGGCCAAGCGAAGTTCAGTACATGGACGTGTCTCCACGTCAGGTTGT ATCTGTTGCTGCGTCTCTTATCCCGTTCCTAGAGCACGATGATGCTAACCGTGCATTGATGGGATCAAACATGCAGCGTC AAGCTGTACCAACACTAAAGGCGCAAAAGCCGTTAGTGGGTACAGGTATGGAGCGCAATGTTGCTGCCGACTCTGGTGTA TGTGTTGTTGCTAAACGCGGCGGTGTTATCGAGCGTGTTGATGCTGCTCGCATTGTTGTGCGTGTAGCCGACGACGAAGT TGAAGCGGGTGAAGCAGGTGTAGATATTTACAACCTTACCAAATACACCCGTTCAAACCAGAATACGTGTATTAATCAGC GTTCAATTGTACGCACTGGTGAGAAAGTATCTCGCGGTGACATTCTTGCAGACGGCCCATCCGTAGATTTGGGTGAGTTG GCACTTGGGCAAAATATGCGTATCGCATTTATGCCTTGGAATGGTTACAACTTTGAGGATTCGATCCTCGTTTCTGAGCG TGTAGTTCAGGAGGATCGTTTTACTACTATTCACATTCAGGAATTAACCTGTATTGCTCGTGACACCAAATTGGGTAGCG AAGAAATTACAGCGGATATTCCAAACGTAGGTGAAGGTGCTCTATCCAAGTTGGATGAGTCCGGTATTGTTTACGTGGGT GCGGAAGTAGCTTCTGGCGATATTCTTGTTGGTAAAGTTACGCCTAAAGGTGAAACGCAGCTAACACCAGAAGAAAAGCT CTTACGTGCAATTTTCGGTGAGAAAGCGTCCGACGTAAAAGATACTTCATTGCGCGTGCCTTCAAGTGTTAAGGGTACGG TTATAGATGTGCAGGTATTTACGCGCGATGGTTTAGAAAAAGACCAGCGTTCACGTGATATCGAAAAAGCACAGCTAGAT CAAATTCGTAAGGACTTAAACGAAGAGTACCGTATTGTTCAAGGCGCTACTTTTGAGCGTTTACGCGCTGCACTTGTGGG TAATACCGCAATGACAGGCAAGGGCGTTGTTAAAGGGCAGCCGGTAACGGATGAGATGCTAGACGAGCTTAGCCATGATG ATTGGTTCAAGATTCGTATGAATGACGATGTGCTCAATGAGCAAATCGATGCCGCTGAAGTTGCTTTGGCAGAGCGTCGT AAAGAGCTCGATGATCGCTTCGAAGATAAAAAAGGCAAGTTGGAAACCGGTGATGATCTGGCTCCAGGTGTGTTGAAAAT TGTTAAGGTTTACTTGGCAATTAAACGACGCATTCAGCCTGGTGATAAGATGGCCGGTCGTCACGGTAACAAGGGTGTTA TCTCTGTGATCATGCCTGTTGAAGATATGCCATACGACGAAAATGGTAACCCCATTGATATCGTATTGAACCCGCTTGGT GTTCCTTCTCGAATGAACGTTGGTCAGGTTTTAGAGATGCACTTAGGTCTTGCAGCTAAGTCGCTAGGTGAAAAGATTGA TGAAATGTTGAAGCAGCAAAAAGCTGTTGCAGAAATTCGCCAGTTCTTGGATCAAATCTATAACCAAATAGGCGAGTCGT ATAAAGCTGAAGAGCTCGATACGTTTAGCGACGACGAAATTATCGAGTTAGCTAACAACTTGCGTGACGGCGTGCCTATG GCTACCCGTGCGTTCGATGGTGCTAAAGAGAAAGAAATTAAGCAATTGTTAACCTTGGGTGGTATGCCGGATTCAGGTCA GATGACTTTGTTTGATGGTCGTACTGGTGATCCGTTCCAGCGTCCAACAACTGTGGGCTATATGTATATGCTCAAGTTGA ACCACTTGGTTGACGATAAAATGCACGCCCGTTCGACTGGTTCCTACAGCCTTGTTACTCAGCAGCCGCTGGGTGGTAAA GCGCAGTTTGGTGGTCAGCGATTTGGTGAGATGGAGGTGTGGGCCCTCGAAGCATATGGTGCAGCGTATACGTTGCAAGA AATGCTAACCGTTAAATCGGATGACGTGGCCGGTCGTACTAAGATGTATAAAAACATCGTAGACGGTGACCACCGCATGG AGCCTGGCATGCCTGAGTCCTTTAACGTATTGGTTAAAGAGATTCGCTCACTCGGTATTAATATCGAGCTAGAGCAGGAC AACTAA Protein sequence : MAYSYTEKKRIRKDFGKLPDVMEVPYLLAIQLDSYRKFTQADTPFDQRKDMGLHAAFKSIFPIVSYSGNAALEYVSYALG KPVFDVKECVLRGATYAVPLRVKVRLIIYDKDSSSKAIKDIKEQEVYMGEIPLMTDNGTFVVNGTERVIVSQLHRSPGVF FEHDKGKTHSSGKLLYSARVIPYRGSWLDFEFDPKDLVFVRIDRRRKLPASILLRALGYTTEQMLDMFYETSKFGLTETG ECVLELVPSRLRGDVTTFEIKDKDGNLIVEDGRRITARHIRQLEKAGVTELSVPHEYMVGRALAKDIINAESGEVLFECN TEITDEVLAELVKSGVKEFETLYTNELDCGPFISDTLRSDPARTQLEALVEIYRMMRPGEPPTKESAETLFQNLFFSSER YDLSAVGRMKFNRRLGRDSEVGSGTLSNEDIVDVLKTLIDIRNGKGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERA VKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTH YGRVCPIETPEGPNIGLINSLATYARTNSYGFLESPHRKVVDGKVTDEIEYLSAINEAKFVIAQASAAQNENGELTEELV SVRFQNEFTLKGPSEVQYMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKAQKPLVGTGMERNVAADSGV CVVAKRGGVIERVDAARIVVRVADDEVEAGEAGVDIYNLTKYTRSNQNTCINQRSIVRTGEKVSRGDILADGPSVDLGEL ALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELTCIARDTKLGSEEITADIPNVGEGALSKLDESGIVYVG AEVASGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSVKGTVIDVQVFTRDGLEKDQRSRDIEKAQLD QIRKDLNEEYRIVQGATFERLRAALVGNTAMTGKGVVKGQPVTDEMLDELSHDDWFKIRMNDDVLNEQIDAAEVALAERR KELDDRFEDKKGKLETGDDLAPGVLKIVKVYLAIKRRIQPGDKMAGRHGNKGVISVIMPVEDMPYDENGNPIDIVLNPLG VPSRMNVGQVLEMHLGLAAKSLGEKIDEMLKQQKAVAEIRQFLDQIYNQIGESYKAEELDTFSDDEIIELANNLRDGVPM ATRAFDGAKEKEIKQLLTLGGMPDSGQMTLFDGRTGDPFQRPTTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGINIELEQD N |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 73 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 73 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 81 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 73 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 73 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 73 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 73 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 73 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 72 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 72 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 72 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 72 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 72 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 72 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 71 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 71 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 65 |
| Sde_0924 | YP_526398.1 | DNA-directed RNA polymerase, beta subunit | AE016830.1.gene3155. | Protein | 0.0 | 46 |
