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Name : secD (Bpro_4645) Accession : YP_551426.1 Strain : Polaromonas sp. JS666 Genome accession: NC_007948 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 4927781 - 4929655 bp Length : 1875 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAATCGTTATCCGGCCTGGAAGTACGCCATTATTGTGGTCGCGCTATTGATCGCAGCCCTGTACACGCTGCCCAACTT TTTTGGCGAAGCGCCGGCAGTGCAGATTTCCAGCGGCAAGTCCACGGTCAAGATTGACACGACGACGATGGCGAGGGTGG AACAGGCGCTCAAGGATGTGGGCATCACGGCGGATGTCATCGCCCTGGAGGGTACTTCGGTCAAGGCACGCTTTGGCGAT ACCGATACCCAGCTCAAGGCGAAAGACGCCGTCCAGAAGGCGCTGTCGCCCGATCCCGCGAATCCGTCGTATGTGGTCGC GCTCAACCTGCTGTCGCGCTCACCCGCCTGGCTGACTTCGCTGCACGCGTTTCCCATGTACCTGGGGCTGGACCTGCGTG GCGGCGTGCATTTCATGCTGCAGGTGGACATGCAGGCGGCGCTGACCAAACGGGCCGAGTCCCTGTCGGGCGACATTCGC CTGTCGCTGCGCGAAAAAAATATCCGCCATGGTGGCATCAGCCGCAATGCCCAGGCCATTGACATCAAGGTTCGCGACAG CGAGACCCTGGCCTCTGCCAAGGCGCTGATCCAGGATCAGTTTCCGGACCTGCAGACCGTCGATGTCCCGGAGGGCACGG AGTACAAGCTGACGGCCAGCATCAAGCCCGAGGCGGCGCGCCGGATCCAGGATCAGGCGCTCAAGCAGAACATGGTCACG CTGCACAACCGGATCAACGAGCTGGGCGTGGCCGAGCCGGTGATTCAGCAGCAGGGCCTGGACCGTATCGTGGTGCAATT GCCGGGTGTTCAGGATACGGCCAAGGCCAAGGACATCCTGGGGCGTACAGCGACACTGGAGATGCGTCTCGTGGAAGACA GCGCCGAGGCGCGCGCTGCGGAAAACAACACCGGTGCCGTGCCGTTTGGCACCGAGCGCTTTTTCGAGCGCAACGGGCAG GCGGTGATTGTCAAGAAACAGGTGATCCTGACCGGCGAGAACCTGACGGATGCCCAGCCCGGCTTTGACTCGCAGAACCA GCAGCCCAAAGTGGATCTGACGGTCGATGCCAAGGGCGGCCGCATCATGCGCGACACCAGCCGCGAGAACCTGAAGAAAC GCATGGCCATCCTGCTGTTTGAAAAAGGCAAGGGCGAGGTCCTGACCGCGCCGGTCATCCAGAGTGAACTCGGCAACCGC TTCCAGATTTCCGGCTCCATGAGTGTGAGCGAAGCCAATGACCTGGCCTTGCTGCTGCGCGCGGGCTCCCTCGCCGCGCC CATGGAAATCATTGAAGAGCGCACCATCGGCCCGACGCTGGGTGCCGACAATATTTCCAAGGGCTTTCACAGCGTGTCCT GGGGTTTTGTCGTGATCGTGGCCTTCATGGCGGCCTACTACATGCTGTTCGGCCTGATCTCCGGCCTGGCGCTGGCGGTG AACCTGCTGCTGCTCGTCGCGGTGCTTTCCATGCTGCAGGCGACCCTGACCTTGCCCGGCATGGCGGCCATGGCACTGGC ACTGGGCATGGCCATCGACTCCAACGTGCTGATCAATGAGCGCGTGCGCGAGGAATTGCGCAATGGCGCCTCGGCCCAGG CGGCCATTCATGCGGGGTATGAGCGGGCCTGGGCCACCATCCTGGACTCCAACACCTCGACCCTGATTGTGGGCCTGGCA TTGCTGGCCTTTGGTTCCGGCCCGGTACGCGGTTTTGCGGTGGTGCACTGCATCGGCATTTTGACCAGCATGTTCTCTGC GGTATTTTTCTCGCGTGGCCTGGTCAATCTCTGGTATGGCCGGCAGAAAAAGCTCAAGACGGTGTCCATCGGCACGGTGT GGCGGCCCGACGCGTCCGGCGCTGTGGCGAAATGA Protein sequence : MNRYPAWKYAIIVVALLIAALYTLPNFFGEAPAVQISSGKSTVKIDTTTMARVEQALKDVGITADVIALEGTSVKARFGD TDTQLKAKDAVQKALSPDPANPSYVVALNLLSRSPAWLTSLHAFPMYLGLDLRGGVHFMLQVDMQAALTKRAESLSGDIR LSLREKNIRHGGISRNAQAIDIKVRDSETLASAKALIQDQFPDLQTVDVPEGTEYKLTASIKPEAARRIQDQALKQNMVT LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVEDSAEARAAENNTGAVPFGTERFFERNGQ AVIVKKQVILTGENLTDAQPGFDSQNQQPKVDLTVDAKGGRIMRDTSRENLKKRMAILLFEKGKGEVLTAPVIQSELGNR FQISGSMSVSEANDLALLLRAGSLAAPMEIIEERTIGPTLGADNISKGFHSVSWGFVVIVAFMAAYYMLFGLISGLALAV NLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERVREELRNGASAQAAIHAGYERAWATILDSNTSTLIVGLA LLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGRQKKLKTVSIGTVWRPDASGAVAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-90 | 42 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-90 | 42 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-90 | 42 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-90 | 42 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-90 | 42 |
