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Name : rpoB (Bxe_A0306) Accession : YP_560679.1 Strain : Genome accession: NC_007951 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 4525937 - 4530043 bp Length : 4107 bp Strand : - Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : ATGCAATATTCCTTCACCGAGAAGAAGCGTATTCGCAAGAGTTTTGCGAAGCGCCCCATCGTTCACCAAGTACCTTTCCT GCTGGCTACCCAGCTTGAATCATTCAGCACGTTTCTGCAAGCAGACACGTCGTCCACGCAACGCAAGCCGGAAGGCCTGC AAGCTGCGTTTACCTCCGTTTTTCCCATTGTTTCGCATAACGGGTTCGCTCGTCTAGAGTTCGTCAGCTACATGCTGTCG CCGCCGGCATTCAACATCAAGGAATGTCAGCAGCGCGGTTTGACCTATTGCTCGGCCCTGCGCGCGAAAGTGCGTCTGGT GCTGCTCGACAAGGAATCCCCGAGCAAGCCGGTCGTCAAGGAAGTGAAGGAACAGGAAGTGTACATGGGCGAAATTCCGC TCATGACGCCGACGGGTTCGTTCGTCATCAACGGCACGGAACGTGTGATCGTTTCGCAGCTGCACCGTTCGCCTGGCGTG TTCTTCGAACACGACAAGGGCAAGACGCACAGCTCGGGCAAGCTGCTGTTCTCGGCACGTATCATTCCTTACCGCGGTTC GTGGCTCGATTTTGAGTTCGACCCGAAGGATGTGCTGTACTTCCGCGTCGACCGCCGCCGCAAGATGCCGGTCACGATCC TGCTGAAGGCAATCGGCCTCACGCCGGAACAGATCCTCGCAAACTTCTTCGTGTTCGACAATTTCACGCTGATGCCGGAA GGCGCGCAGATGGAATTCGTGCCGGAGCGTTTGCGTGGTGAAGTCGCGCGTTTCGACATCACGGACCGTGACGGCAACGT GATCGTCCAGAAGGACAAGCGGATCAACGCCAAGCACATTCGCGATCTCGACAACGCCAAGACCAAGTTCATCTCGGTCC CGGAAGACTATTTGCTCGGCCGCGTGCTGGCGAAGAACGTGGTCGACGGCGACACGGGTGAAGTCATCGCTAACGCGAAC GACGAAATCACGGAAACCGTGCTCGAGAAGCTGCGCGAGTCGAAGATCAAAGACATCCAGACGCTCTACACGAACGATCT GGATCAAGGTCCGTACATCTCGTCGACACTGCGTATCGACGAAACCGCGGACAAGATGGCCGCGCGCATTGCAATTTACC GCATGATGCGTCCGGGCGAGCCGCCGACCGAAGAAGCGGTCGAGGCGCTATTCAACCGTCTGTTCTACAGCGAAGACGCA TACGACCTGTCCAAGGTGGGTCGTATGAAGTTCAATCGCCGTGTCGGCCGCGACGAAATCGTCGGTCCGATGACGCTGCA AGACGACGATATCCTCGCCACGATCAAGATCCTGGTCGAGCTGCGTAACGGCAAGGGCGAAGTGGACGACATCGACCACT TGGGCAATCGTCGTGTGCGTTGCGTCGGCGAACTGGCCGAAAACCAGTTCCGCGCCGGTCTCGTGCGTGTCGAACGTGCT GTGAAGGAACGCCTCGGCCAGGCCGAAAGCGAAAACCTGATGCCGCACGATCTGATCAACTCGAAGCCGATTTCGTCGGC GATTCGCGAGTTCTTCGGTTCGTCGCAGCTGTCGCAGTTCATGGACCAAACGAACCCGCTGTCGGAAATCACCCACAAGC GCCGTGTTTCGGCTCTTGGCCCGGGCGGTTTGACGCGTGAGCGCGCCGGCTTTGAAGTCCGTGACGTGCATCCGACTCAC TACGGTCGCGTGTGCCCGATTGAAACGCCGGAAGGTCCGAACATCGGCCTGATCAACTCGCTCGCTCTGTACGCGCACCT GAACGAATACGGCTTCCTCGAAACGCCGTATCGCAAGGTCGTGGACAGCAAGGTGACCGATCAGATCGACTATCTGTCGG CGATCGAAGAAGGCCGTTACGTGATCGCTCAGGCGAACGCGGCGGTGGCGGAAGACGGCTCGCTGACCGACGAACTGGTG TCGTCGCGTGAAGCAGGCGAAACGCTGATGGTCACGCCGGACCGCATCCAGTACATGGACGTGGCGCCGTCGCAGATCGT GTCGGTGGCAGCATCGCTGATTCCGTTCCTCGAGCACGATGACGCGAACCGCGCGTTGATGGGTTCGAACATGCAGCGTC AGGCTGTGCCGTGTCTGCGTCCTGAAAAGGCCGTGGTCGGTACCGGTATCGAGCGCACGGTGGCAGTCGACTCGGGTACG ACGGTTCAGGCATTCCGCGGTGGCGTGGTGGACTACGTCGACGCAGGCCGTATGGTGATCCGCGTGAACGATGACGAAGC CGTTGCTGGCGACGTCGGCGTGGACATCTACAACCTGATCAAGTACACGCGTTCGAACCAGAACACGAACATCAACCAGC GCCCGATCGTGAAGGTCGGCGACATCGTGTCGCGTGGCGACGTGCTGGCTGACGGCGCATCCACCGACCTCGGCGAACTG GCTCTCGGCCAGAACATGCTGGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCGATCCTGATCTCTGAGAA GGTGGTTGCCGACGACCGTTACACGTCGATCCACATTGAAGAACTGAACGTCGTGGCTCGCGATACGAAGCTCGGACCGG AAGAAATCACGCGCGACATCTCGAACCTGGCTGAAGTGCAACTCGGCCGTCTCGACGAGTCGGGCATCGTCTACATCGGC GCTGAAGTCGAAGCAGGCGACGTGCTGGTCGGCAAGGTCACGCCGAAGGGCGAAACCCAGCTGACACCGGAAGAAAAGCT GCTGCGCGCGATCTTCGGTGAGAAGGCTTCGGACGTGAAGGACACGTCGCTGCGCGTGCCGTCGGGCATGAGCGGCACCG TGATCGACGTTCAAGTGTTCACGCGTGAAGGCATTCAGCGCGACAAGCGCGCGCAACAGATCATCGACGATGAACTGAAG CGTTACCGCCTCGACCTGAACGACCAGCTGCGTATCGTGGAAGGCGACGCGTTCCAGCGTCTCGCACGTATGCTGACCGG CAAGGTCGCGAACGGCGGTCCGAAGAAACTGGCGAAGGGCACGAAGATCGAACAGGCTTACCTGGAAGATCTGGATCACT ACCACTGGTTCGACATCCGCCTCGCGGACGAAGAAGCAGCGGCACAGCTCGAAGCGATCAAGGACTCGATCGAACAGAAG CGTCACCAGTTCGATCTGGCGTTCGAAGAAAAGCGCAAGAAACTCACGCAAGGCGACGAACTGCCGCCGGGCGTGTTGAA GATGGTCAAGGTGTACCTGGCAGTCAAGCGCCGCCTGCAGCCTGGCGACAAGATGGCCGGCCGTCACGGTAACAAGGGCG TGGTATCGAAGATCGTTCCGATCGAAGACATGCCGTACATGGCCGACGGCCGTCCGGCTGACGTCGTTCTGAACCCGCTC GGCGTGCCGTCGCGGATGAACGTGGGTCAGGTTCTCGAAGTGCATCTGGGTTGGGCCGCGAAGGGTCTCGGCTGGCGTAT CGGCGAAATGCTGCAGCGTCAGGCCAAGATCGCTGAACTGCGCGAATTCCTGACCAAGATCTACAACGAGTCGGGCCGCG CTGAAGAGCTGGACAGCTTCACGGACGACGAAATCGTCGAACTGGCGAAGAACCTGCGCGAAGGCGTGCCGTTCGCTACG CCGGTGTTCGACGGCGCGACGGAAGAGGAAATGTCGCGCGCGCTGGATCTCGCATTCCCGGACGACATCGCGAAGAACCT CGGCATGACGCCGTCGAAGAACCAGGTGCGTCTGTACGACGGCCGCACGGGCGAAATGTTCGAACGTACGGTGACGGTCG GCTACATGCACTACCTGAAACTGCACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACGGGCCCGTACTCGCTCGTG ACGCAGCAGCCGTTGGGCGGTAAGGCGCAATTCGGTGGCCAGCGTTTCGGTGAAATGGAAGTGTGGGCGCTCGAAGCGTA CGGCGCATCGTACGTGCTGCAGGAAATGCTGACGGTGAAGTCGGACGACGTGACAGGCCGGACCAAGGTTTATGAAAACC TGGTCAAGGGCGATCACGTGATCGACGCCGGCATGCCGGAATCCTTCAACGTGTTGGTGAAGGAAATCCGCTCGCTCGGT ATCGATATCGACCTCGACCGCAACTAA Protein sequence : MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSVFPIVSHNGFARLEFVSYMLS PPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVKEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGV FFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPE GAQMEFVPERLRGEVARFDITDRDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLLGRVLAKNVVDGDTGEVIANAN DEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTLRIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDA YDLSKVGRMKFNRRVGRDEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTH YGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKVVDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGSLTDELV SSREAGETLMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT TVQAFRGGVVDYVDAGRMVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIVKVGDIVSRGDVLADGASTDLGEL ALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIG AEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK RYRLDLNDQLRIVEGDAFQRLARMLTGKVANGGPKKLAKGTKIEQAYLEDLDHYHWFDIRLADEEAAAQLEAIKDSIEQK RHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPL GVPSRMNVGQVLEVHLGWAAKGLGWRIGEMLQRQAKIAELREFLTKIYNESGRAEELDSFTDDEIVELAKNLREGVPFAT PVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVGYMHYLKLHHLVDDKMHARSTGPYSLV TQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLG IDIDLDRN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 66 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 82 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 77 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 74 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 68 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 66 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 66 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 66 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 66 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 66 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 66 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 66 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 65 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 65 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 65 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 65 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 65 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 65 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_009782.5559150.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_002953.2862188.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_002952.2860169.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_007793.3914836.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_003923.1002608.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_013450.8613267.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_009641.5330265.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_010079.5776819.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_007622.3792928.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_002745.1123305.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_007795.3920377.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_009632.5315067.p0 | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 46 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_002758.1120515.p0 | Protein | 0.0 | 45 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_009487.5169226.p0 | Protein | 0.0 | 45 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_002951.3236234.p0 | Protein | 0.0 | 45 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 45 |
| rpoB | YP_560679.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 2e-174 | 43 |
