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Name : secD (Sden_1403) Accession : YP_562412.1 Strain : Shewanella denitrificans OS217 Genome accession: NC_007954 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1635306 - 1637156 bp Length : 1851 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATAAATACCCAATGTGGAAGAACATCATGGTGATGCTTGTCATCGCTGTTGGTGCTTTTTATGCGATCCCAAA CCTATTCGGTGAAGATCATGCAGTTCAAGTTGTTGCCACTCGCGGCGCAGAAGTCACGACTTCGACCCAAACGAGTGTCA TCGAATTACTCGAGAGCAAAGGCATTGCGGTAAAGCGCGCTGAGCTCACAAATGGTCAGTTGCTGGTTCGTGTGCAGAAT GGCGAGCAGCAACTAACGGCTAAAGAGGCCATTGCAGACAGTCTAGGCAATAAGTTCACTGTCGCATTAAACCTAGCGCC AGCAACCCCTGAGTGGCTAGAAGCCCTTGGTGGTAGCCCAATGAAGCTAGGGCTAGATTTACGTGGCGGCGTGCATTTCC TGATGGAAGTGGATATGAGCGAAGCTGTTCGTAAAATGGAAGAGGCAAAGATTGCCGATTTCCGTAGTCAATTACGTGAA GAAAAAATTCGCTATGCCGGTGTGCGTAAGACACCTAAAGGCATAGAAATTAAGTTCCGTGATGCCGACACTGTGGCGAA AGCCGAAGCTTATTTGAAGACTCGCGGCAATGACATGACATTTGCCGATGCCAGTGAAGGCGACAACTTCGTGCTCCGTG CCAACATGAGCGAAGTTTACGTCAAGCAAATTAAAGAAGAAGCGCTGCAGCAAAACATCATCACCATTCGTAATCGTGTC AACGAATTGGGTGTTGCTGAACCTGTGGTGCAGCGTCAGGGCGCCGAGCGCATTATTGTTGAGTTGCCAGGTGTACAGGA TACGGCTCGCGCCAAGGAAATCTTAGGTGCAACCGCATCGATTGAATTCCATATGCTCGATGATAAAGCCGATCCAAGTG CAGCGGCCAGTGGCCGGGTGCCAGCGGGTTCTCAAGTCTATCCTCGCCGCGAAGGCGGTATTGCTGTGCTTAAGAAAGAA ATCATGCTTACGGGTAATCATATTACCGGTGCTCAGCCTTCTTTTGATGAATACAGTCGTCCACAGGTGTCGATTAACTT AGATGCGCAGGGAGGAAATATCTTCTCTAACGTGACTAAGGACAATATCGGTAAACCAATGGCAACGCTGTTTATCGAAT ACAAAGACAGTGGTCTGCGAAACCCCAATGGCACAGTGAAAATGACCAAGATTGAAGAGGTTATTTCTGTGGCCACCATT CAGGCGCGCCTTGGTCGTAACTTTGTGATTAACGGCCTTGAACATGCTGAATCGCAAAATTTAGCCTTGTTATTACGTGC AGGTGCTTTGATTGCCCCTGTGACTATCGTTGAAGAACGCACCATAGGCCCAAGCCTTGGCGCTGAGAACATCCAAAACG GCATGCAAGCCATGATTTGGGGTCTTGCGATCGTTCTGATATTTATGATGATCTACTACCGTGCATTTGGCATCATTGCG AACATTGCATTGCTAGCCAACATCATCATGGTTGTGGGCGTCATGTCTATGATCCCAGGTGCGGTATTAACCTTACCCGG TATTGCCGGTATGGTATTGACAGTCGGTATGGCCGTTGATGGTAACGTTTTGATTTATGAGCGTATTCGTGAAGAAATCT TAGCGGGACGCAGTGTGCAACAAGCGATTCATGAAGGCTATGCGAATGCGTTATCGACTATTGCCGATGCCAACATCACA ACATTTATGACTGCACTTATTATGTTTGCTGTGGGCACCGGCGCCGTTAAAGGTTTCGCCGTGACCCTGATGATAGGTAT CGCGACCTCAATGTTTACCGCTATCGTCGGAACACGTTCAATCGTGAACGCCGTTTGGGGTGGTAAACGTGTTAAGAAGC TATCTATCTAG Protein sequence : MLNKYPMWKNIMVMLVIAVGAFYAIPNLFGEDHAVQVVATRGAEVTTSTQTSVIELLESKGIAVKRAELTNGQLLVRVQN GEQQLTAKEAIADSLGNKFTVALNLAPATPEWLEALGGSPMKLGLDLRGGVHFLMEVDMSEAVRKMEEAKIADFRSQLRE EKIRYAGVRKTPKGIEIKFRDADTVAKAEAYLKTRGNDMTFADASEGDNFVLRANMSEVYVKQIKEEALQQNIITIRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMLDDKADPSAAASGRVPAGSQVYPRREGGIAVLKKE IMLTGNHITGAQPSFDEYSRPQVSINLDAQGGNIFSNVTKDNIGKPMATLFIEYKDSGLRNPNGTVKMTKIEEVISVATI QARLGRNFVINGLEHAESQNLALLLRAGALIAPVTIVEERTIGPSLGAENIQNGMQAMIWGLAIVLIFMMIYYRAFGIIA NIALLANIIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREEILAGRSVQQAIHEGYANALSTIADANIT TFMTALIMFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAVWGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-120 | 47 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-119 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-119 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-119 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-119 | 47 |
