|
Name : RPD_2003 (RPD_2003) Accession : YP_569139.1 Strain : Rhodopseudomonas palustris BisB5 Genome accession: NC_007958 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 2240201 - 2242183 bp Length : 1983 bp Strand : + Note : - DNA sequence : ATGATCGCCGAAGCGGGGCACTACGCGCTGGTGCTGGCGCTTGCGCTGGCGTTGATCCAGTCCACCGTGCCGATCCTCGG CGCGCGGCTGAACGACGGCGGCCTGATGAATGTCGCGCGCTCCACGGCGCTCGCACAATTCGCCTTCGTCGCGGCGTCGT TCGGCGCGCTGGTTTATCTCAACGTCACCTCGGACTTCTCGGTTCTCAATGTCTACGAGAACTCGCATTCGGCAAAGCCG CTGCTCTACAAGATCACCGGCGTGTGGGGAAACCACGAAGGCTCGATGCTGCTGTGGGTCGCGATCCTGGCGCTGTTCGG CGGTCTGGTCGCTGCATTCGGCAACAATCTGCCGCTTTCGTTGCGCGCCCATGTGCTGGCGGTGCAGGCCTGGGTCGCCA GCGCGTTCTATCTGTTCATCCTGATCACCTCGAACCCGTTCCTGCGGATTCCCAATCCGCCGATCGAGGGGCGTGACCTC AATCCGGTATTGCAGGACATCGGCCTCGCGGTGCATCCGCCGCTGCTCTATCTCGGCTATGTCGGCTTCTCGATCTCGTT CTCCTTCGCCGCCGCGGCGCTGCTCGAAGGCCGGCTCGACGCCGCCTGGGCGCGCTGGGTGCGGCCGTGGACGCTGATGG CGTGGATCTTCCTGACGCTCGGCATCGCGATGGGCTCGTATTGGGCTTACTACGAACTCGGCTGGGGCGGCTGGTGGTTC TGGGACCCGGTCGAGAACGCCTCACTGATGCCATGGCTCGCCGGCACCGCGCTGCTGCATTCGGCGCTGGTGATGGAGAA GCGCAACGCGCTGAAGGTCTGGACCATCCTCCTCGCGATCCTGACGTTCTCGCTGTCGCTGCTCGGCACCTTCCTGGTGC GCTCCGGCGTCTTGACCTCGGTGCACACCTTCGCCACCGATCCGTCGCGTGGCGTGTTCATCCTGGTAATTCTGTGCGTC TTCATCGGCGGCAGTCTCGCGCTGTTCGCCTGGCGCGCTTCGGCGTTGAAGCAGGGCGGGCTGTTCGCACCGATCTCCCG CGAGGGCGCGCTGGTGCTGAACAATCTGTTCCTCACCACCGCCTGCGCCACGGTGTTCGTCGGTACGTTGTATCCCTTGG CGCTCGAAGTCGTCACCGGTGACAAGATCTCGGTCGGCGCGCCGTTCTTCAATCTCACCTTCGGGCCGCTGTTCGTGCCG CTGATGCTGGCGATGCCGTTCGGGCCGCTGCTGGCGTGGAAGCGCGGCGACATCGTCGGCGCGGCGCAGCGGCTGATCGC GGCCGGCGTCGTGGCGCTGCTGACGGTCGCCCTGGTCTGGGCCTGGACCACCGGCGGCCCGGTGCTCGCGCCGCTGGCGA TCGGGCTCGCGGTGTTCGTGATCGCCGGCGCGCTTGCCGACATCGCCGAACGCATCGGACTGTTCCGCAACCCGCTGTCG ATCTCCACGCGCCGTGCGCGCGGGCTGCCGCGCTCGGCCTGGGGCACGATGTTCGCCCATGCCGGCGTCGGCATGGCGCT GATCGGCATCGTCTGCGAGACCACCTGGAACAGCGAGCACATCGCCGCGATGAAGGAGGGCGATACAGCGCGGATCGCCG GCTACGAACTCAAATTCGAAGGCGCGATGCAGCGCCAGGGGCCGAATTTTCGCGAATTGGAGACGCGCTTCTCGATCAGC GAGGGCGGCCAGCCGGTCGGCGTCATGACGCCGTCGAAGCGCAGCTTCACCACCCGCGGCACCTCGACCACCGAGGCGGC ACTGCTGACCCGTGGCTTCAGCCAGCTTTACGTCTCGCTCGGCGAGATCGACGCCGCGGGCGCGGTGACGGTGCGGATCT ATCACAAACCGATGGTGCTGCTGATCTGGTTCGGCCCGCTGCTGATGGCGTTCGGCGGCCTGTTGTCGCTGTCCGACCGT CGCCTGCGCGTCGGCGCACCGAAACCGGCCAAGCCGCAGCGTACGCTGCAGCCGGCGGAGTAG Protein sequence : MIAEAGHYALVLALALALIQSTVPILGARLNDGGLMNVARSTALAQFAFVAASFGALVYLNVTSDFSVLNVYENSHSAKP LLYKITGVWGNHEGSMLLWVAILALFGGLVAAFGNNLPLSLRAHVLAVQAWVASAFYLFILITSNPFLRIPNPPIEGRDL NPVLQDIGLAVHPPLLYLGYVGFSISFSFAAAALLEGRLDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTILLAILTFSLSLLGTFLVRSGVLTSVHTFATDPSRGVFILVILCV FIGGSLALFAWRASALKQGGLFAPISREGALVLNNLFLTTACATVFVGTLYPLALEVVTGDKISVGAPFFNLTFGPLFVP LMLAMPFGPLLAWKRGDIVGAAQRLIAAGVVALLTVALVWAWTTGGPVLAPLAIGLAVFVIAGALADIAERIGLFRNPLS ISTRRARGLPRSAWGTMFAHAGVGMALIGIVCETTWNSEHIAAMKEGDTARIAGYELKFEGAMQRQGPNFRELETRFSIS EGGQPVGVMTPSKRSFTTRGTSTTEAALLTRGFSQLYVSLGEIDAAGAVTVRIYHKPMVLLIWFGPLLMAFGGLLSLSDR RLRVGAPKPAKPQRTLQPAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 8e-85 | 45 |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 5e-101 | 45 |
