Gene Information

Name : Nham_4339 (Nham_4339)
Accession : YP_571766.1
Strain :
Genome accession: NC_007959
Putative virulence/resistance : Virulence
Product : carboxysome structural peptide CsoS1B
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 284348 - 284695 bp
Length : 348 bp
Strand : +
Note : -

DNA sequence : 
ATGGCACACGTCAACGGCATTGCCTTGGGCATGATTGAAACCCGCGGGCTGGTTCCCGCGATCGAAGCGGCCGACGCGAT
GACCAAGGCCTCGGAAGTGCGGCTGATCGGCCGGCAATTCGTCGGTGGCGGCTACGTCACCGTGTTGGTGCGCGGCGAGA
CCGGCGCGGTCAACGCGGCGGTGCGTGCCGGGGCTGACGCCTGCGAGCGCGTAGGCGACGGCTTGGTGGCCGCGCACATC
ATCGCGCGGGTGCACAACGAGGTCGAAGGCATCCTGCCGACCCAGCCTGAGGTCAACGGCGGCGGTCGCGGCGGTCGCGA
CGCCGAGATCACGTCCACTCGCAGCTGA

Protein sequence : 
MAHVNGIALGMIETRGLVPAIEAADAMTKASEVRLIGRQFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAHI
IARVHNEVEGILPTQPEVNGGGRGGRDAEITSTRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 7e-11 55
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 1e-10 53
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 5e-10 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nham_4339 YP_571766.1 carboxysome structural peptide CsoS1B VFG1596 Protein 3e-11 55
Nham_4339 YP_571766.1 carboxysome structural peptide CsoS1B VFG1597 Protein 4e-11 53
Nham_4339 YP_571766.1 carboxysome structural peptide CsoS1B VFG1598 Protein 2e-10 47