|
Name : rpoB (Rmet_3334) Accession : YP_585475.1 Strain : Cupriavidus metallidurans CH34 Genome accession: NC_007973 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 3602576 - 3606682 bp Length : 4107 bp Strand : - Note : - DNA sequence : ATGGCGTACAGCTTCACCGAAAAGAAGCGCATTCGCAAATCCTTTGCGAAGCGTGCGACGGTTCATCAGGTTCCATTCCT GCTTGCCACACAGATTGAATCCTACACCCAGTTTTTGCAAGCGGAAACGCCGCCCGCGCGTCGCAAGAGCGAGGGTCTGC AGGCCGCTTTCAACGCGATTTTCCCCATCTCCTCCCATAACGGGCTTGCCCGTATGGAGTTTGTCTCGTATCACCTGTCC AACCCGCCGTTCGACGTCAAGGAATGCCAGCAGCGTGGCCTGACGTTCCACTCGGCGCTGCGCGCAAAGGTTCGCCTGAT CATCAATGATCGCGAGAACCCGGGCAAGGTGAAGGAAGTGAAGGAACAGGAAGTCTACATGGGCGAAATTCCGCTCATGA CTTCGACGGGCTCCTTCGTCATCAACGGCACCGAGCGTGTCATCGTCAGCCAGCTGCACCGCTCGCCGGGCGTGTTCTTC GAGCACGACAAGGGCAAGACGCACAGCTCGGGCAAGCTGTTGTTCTCGGCACGGATTATTCCGTACCGTGGCTCGTGGCT CGACTTTGAATTCGATCCGAAGGACATCCTGTACTTCCGCGTCGACCGCCGCCGCAAGATGCCGGTGACGATCCTGCTGA AGTCGATCGGCCTGACGCCGGAACAGATCCTGGCGCACTTCTTCGTGTTCGACAATTTCACGCTGCAGAGCGAAGGCGCG CAACTCGAGTTCGTGCCCGAGCGTCTGCGCGGCGAAGTCGCGCGCTTCGACATCGTAGACAAGAACGGTCGCGTGGTCGT CGAGAAGGACAAGCGGATCAACGCCAAGCACATCCGTGATCTGGACTCCGCCGGCACCAAGCTGATCAGCGTGCCGGAAG ACTACCTGCTGGGTCGCGTCCTGGCCAAGAACATCATTGATCCGGACACCGGTGAAGTGATCGCCAACGCCAACGACGAA CTGACTGAGACGCTGCTGGAAAACCTGCGAGAAGCCGGCGTCAAGGACATCCAGACGCTGTACACGAACGACCTGGACCA GGGTCCGTACATCTCGCAAACGCTGCGTGCGGACGACACCGCGGACCAGACGGCCGCGCGTATCGCCATCTACCGCATGA TGCGCCCGGGCGAGCCGCCCACCGAAGACGCCGTGGAAGCGCTGTTCCAGCGCCTGTTCTACAGCGAGGAATCGTACGAT CTGTCGCGCGTTGGCCGCATGAAGGTCAACAGCCGTCTGTCGCGCCCGAGCGGCGAAGGCAGCATGGTGCTGCAGGACGA GGACATCCTCGAGACGATCAAGATCCTGGTGAATCTGCGTAACGGCAAGGGTGAAGTCGATGATATCGACCACCTGGGCA ACCGTCGTGTGCGTTGCGTCGGCGAACTGGCAGAGAACCAGTTCCGTGCCGGCCTGTCGCGCGTGGAGCGCGCCGTCAAG GAGCGTCTGGGCCAGGCCGAGACCGAGAACCTGATGCCGCACGACCTGATCAACTCGAAGCCGATCTCGTCGGCGATTCG CGAGTTCTTCGGTTCGTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAAATCACCCACAAGCGCCGTG TTTCGGCTCTTGGCCCGGGCGGTCTGACGCGCGAGCGCGCCGGCTTTGAAGTCCGAGACGTGCACCCGACCCACTATGGT CGCGTGTGCCCGATCGAAACGCCGGAAGGCCCGAACATTGGTCTGATCAACTCGCTGGCACTGTACGCCCGCCTGAACGA GTACGGCTTCCTGGAAACGCCGTACCGCAAGGTGGAAAACAGCAAGCTGACCGACCAGGTGGATTACCTGTCGGCCATCG AGGAAGGCAAGTACGTGGTGGCGCAGGCCAACGCGACCGTTGACGCCGAAGGCAACCTCATCGACGAACTGGTGTCGGCG CGTGAAGGTTCCGAACGTGAAACGCGTATGGTCACGCCGGACCGCGTCCAGTACATCGACGTGGCGCCGTCGCAGATCGT GTCGGCCGCTGCATCGCTGGTGCCGTTCCTGGAACACGATGACGCGAACCGTGCACTGATGGGCGCGAACATGCAGCGTC AGGCCGTGCCTTGCCTGCGTCCGGACAAGCCGCTGGTTGGTACCGGCATCGAGCGTACCGTGGCCGTTGACTCGGGCACG GCCGTTCAGGCAACGCGTGGTGGCGTGGTGGATTACGTCGATGCAATGCGTGTGGTGATCCGCGTGAACGACGACGAAGC CGTAGCCGGTGAAGTCGGCGTGGACATCTACAACCTGATCAAGTACACGCGTTCGAACCAGAACACCAACATCAACCAGC GTCCGATGGTGAAGGTTGGCGATATCGTTGCCCGTGGCGACGTGATCGCCGACGGCGCATCGACCGACCTGGGCGAACTG GCGCTGGGCCAGAACATGCTGGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAGGATTCGATCCTGATCTCGGAGCG TGTGGTTGCCGAAGACCGCTATACCTCGATTCACATCGAGGAACTGTCGGTCGTCGCCCGCGACACGAAGCTCGGACCTG AAGAAATCACGCGCGACATCTCGAACCTGGCCGAAGCGCAACTGGCGCGTCTGGACGAGTCTGGCATCACGTACATCGGC GCGGAAGTCGAAGCCGGCGACGTGCTGGTGGGCAAGGTCACGCCGAAGGGCGAAACCCAGCTCACGCCGGAAGAGAAGCT GCTGCGCGCGATCTTCGGCGAGAAGGCTTCGGACGTGAAGGACACGTCGCTGCGCGTGCCGTCGGGCATGAGCGGTATCG TGATCGACGTGCAGGTCTTCACGCGTGAAGGCGTGACGCGCGACAAGCGCGCCCAGTCGATCATCGACGACGAACTGAAG CGCTACCGTCTGGACCTGAACGACCAGCTCCGTATCGTGGAAGGCGACGCGTTCCAGCGTCTGGAGCGCATGCTGCTCGA CAAGACCGTCAACGGCGGTCCGAAGAAGCTGGCGAAGGGTGCCAAGCTGACCCGCGAGTACCTGGCCGACCTGGACAAGT ACCACTGGTTCGACATCCGTCCGGCCGACGAGGAAGTGGCTGCCCAGCTCGAAGCGGTGAAGGAAGCCATCGAGCAAAAG CGTCACGAGTTCGACCTGGCCTTCGAAGAGAAGCGCAAGAAGCTGACGCAGGGCGACGAACTGCCGCCGGGCGTGATCAA GATGGTCAAGGTGTACCTGGCCGTCAAGCGTCGCCTGCAGCCTGGCGACAAGATGGCAGGCCGTCACGGTAACAAGGGTG TCGTGTCGAAGATCGTTCCGATCGAAGACATGCCGTACATGGCCGACGGTACGCCGGCGGACATCGTGCTGAACCCGCTG GGCGTGCCTTCGCGGATGAACGTGGGTCAGATTCTGGAAACCCACCTGGGCTGGGCCGCTCGCGGTCTGGGCCAGCGTAT CGGCGACATGCTCAAGGCTTCGGCCAAGGCGCAGGAACTCCGTCCGCTGCTCGCGCAGATCTACAACGAGAGTGGCAAGG CCGAAGACCTGGATAGCCTGAGCGACGCTGAAGTGCTGGAACTGGCGGGCAACCTGAAGAAGGGTGTTCCGTTCGCCACG CCGGTGTTCGATGGCGCGCACGAAGCGGAAATCCGCCGGATGCTCGACCTGGCCTACCCGGACGATATCGCGAAGGAACG CGGCCTGACGGCATCGAAGCAGCAGGTCACGCTGCACGATGGCCGTACCGGCGAAGCGTTCGAGCGTCCGGTCACGCTGG GTGTGATGCACATGCTGAAGCTGCACCACTTGGTCGACGACAAGATGCACGCCCGTTCCACCGGCCCGTACTCGCTGGTG ACGCAGCAGCCGCTGGGCGGTAAGGCCCAGTTCGGTGGCCAGCGTTTCGGTGAGATGGAAGTGTGGGCACTGGAAGCCTA CGGCGCATCGTACGTGCTGCAGGAAATGCTGACGGTTAAGTCTGATGACGTGAACGGCCGTACGAAGGTGTACGAGAACA TCGTCAAGGGCGAGCACTCGATCGACGCCGGCATGCCGGAATCGTTCAACGTGCTGGTGAAGGAAATCCGCTCGCTGGGT ATCGACATCGACCTGGATCGCTACTGA Protein sequence : MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIESYTQFLQAETPPARRKSEGLQAAFNAIFPISSHNGLARMEFVSYHLS NPPFDVKECQQRGLTFHSALRAKVRLIINDRENPGKVKEVKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFF EHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLQSEGA QLEFVPERLRGEVARFDIVDKNGRVVVEKDKRINAKHIRDLDSAGTKLISVPEDYLLGRVLAKNIIDPDTGEVIANANDE LTETLLENLREAGVKDIQTLYTNDLDQGPYISQTLRADDTADQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEESYD LSRVGRMKVNSRLSRPSGEGSMVLQDEDILETIKILVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYG RVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKVENSKLTDQVDYLSAIEEGKYVVAQANATVDAEGNLIDELVSA REGSERETRMVTPDRVQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGIERTVAVDSGT AVQATRGGVVDYVDAMRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPMVKVGDIVARGDVIADGASTDLGEL ALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIG AEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGIVIDVQVFTREGVTRDKRAQSIIDDELK RYRLDLNDQLRIVEGDAFQRLERMLLDKTVNGGPKKLAKGAKLTREYLADLDKYHWFDIRPADEEVAAQLEAVKEAIEQK RHEFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGTPADIVLNPL GVPSRMNVGQILETHLGWAARGLGQRIGDMLKASAKAQELRPLLAQIYNESGKAEDLDSLSDAEVLELAGNLKKGVPFAT PVFDGAHEAEIRRMLDLAYPDDIAKERGLTASKQQVTLHDGRTGEAFERPVTLGVMHMLKLHHLVDDKMHARSTGPYSLV TQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLG IDIDLDRY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 66 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 82 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 78 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 74 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 68 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 66 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 66 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 66 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 66 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 66 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 66 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 66 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 66 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 66 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 66 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 65 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 65 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 65 |
| rpoB | YP_585475.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 2e-178 | 43 |
