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Name : rpoB (BCI_0502) Accession : YP_588937.1 Strain : Baumannia cicadellinicola Hc Genome accession: NC_007984 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 507307 - 511329 bp Length : 4023 bp Strand : + Note : identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04565; match to protein family HMM TIGR02013 DNA sequence : ATGCTTTATTCCTACACCGAAAAAAAACGCATTCGTAAAGATTTTGGCAAACGTTCACAAGTCTTAGATGTCCCCTATTT ACTTTCTATACAGCTTGAATCTTTTCAAAAGTTTATTGAACGTGATAATGAAGGTCAGCATGGACTAGAAGCTGCTTTTA GATCTGTGTTTCCCATACAAAGTTATAGTGGTAACGCTGAATTACAATATGTTAGTTATCACTTAGGTGAGCCTGTGTTC GATGTTAAAGAATGTCAAACAAGAGGTTTAACATTTTCTGCTCCACTACGCGTAATTTTGCGTCTTATCATTCGTGATGC CACAACAGAAACTCCTATTAAAGAACAAGAAGTATATATGGGTGAAATTCCTCTTATGACGGAAAATGGTACGTTTGTTA TTAATGGAACTGAGCGTGTAATTGTTTCTCAGTTACACCGTAGTCCTGGTGTTTTTTTTGATAGTGATAAGGGTAAGATA CATTCATCAGGTAAGGTTTTATTTAATGCACGTATTATTCCTTATAGAGGATCATGGTTGGATTTTGAATTTGACCAGAA AGATCACTTATTTGTTCGTATTGACCGCCGCCGTAAATTACCGGCAACGATTATCTTACGTGCATTGCAACTTAGCACTA ACCAAATTTTAGATACCTTCTTCGAAAAAGTTATTTTTCATCTAAATGATGAACATATACAAATGGAACTAGTTCCTGAG CGTCTACGTGGAGAAACTGCTTCATTTGATATTATAGCCAATGGTACTATATATGTTAATAAAGGTCGTCGTATTACAGC ACGTCATATTCATCAGTTAAAAATAGATAGTATAGATCGAATTAATGTTCCTAGAGAATATTTAGTAGGTAAAATTATAG CAATAGATTATATTCATGATAATACTGGTGAAATTATCGTCCCTGCCAATATAGAAATTACGCTAGAAATACTAGATAAA TTAGGTAAAGCTAATTTTAAACGTATTGAAACATTATTTACTAATGACTTAGATCATGGTGCTTATATTTCCGAAACATT ACGGATTGATTCAACTAGAGACAGGCTTAGTGCACTAGTCGAAATTTACCGTATGATGCGTCCTGGTGAGCCACCAACAC GTGAAGCAGCAGAAAATCTTTTCGAAAACATTTTTTTCTCAGAAGATCGTTATGATCTATCAGCGGTAGGTAGAATGAAA TTTAATCGTGCTCTTTTGCGTGAAGAAATAGAAGGATCAGGTCTGTTAAGTAAAAGTGATATTATCGAAGTAATGAAGAA ACTGATCGATATTCGTAACGGTAAGGGTGAAGTAGATGATATCGATCATCTTGGTAATCGTCGTGTTCGTTCTGTCGGTG AAATGGCCGAAAATCAATTTAGAATTGGTCTAGTTCGTGTTGAACGTGCCGTAAAAGAGCGTTTATCTTTAAGTGATCTA GAGAGTTTAATGCCACAAGATATTATCAATGCAAAGCCAATCTCAGCAGCAATTAAAGAATTTTTTGGTTCCAGTCAGCT ATCACAGTTTATGGATCAGAATAATCCACTTTCTGAAATTACTCATAAACGTCGTATTTCCGCATTAGGACCTGGAGGAT TAACTAGGGAACGTGCTGGATTTGAAGTACGTGATGTACATCCGACTCATTATGGAAGAGTGTGCCCAATTGAAACTCCA GAAGGACCTAACATTGGTTTAATAAACTCTCTATCGGTATACGCAAAAACTAATGAGTATGGTTTTTTAGAAACACCATA TCGGCTTGTACATAACAGTGTAGTGACTGAAGAGATTCATTATTTATCTGCAATTGAAGAGGGTAATTTTATTATAGCTC AGGCTAATACTAATCTTGATGACAAAGGTAATTTTGTAGAAGAGCTAGTTACTTGTCGTCATAAAGGGGAATCAGGGTTC TTTAGTCGTGAAAAAGTACATTATATGGATGTTTCTACTCAGCAAATAGTTTCAGTAGGTGCCTCGCTTATTCCATTTTT AGAGCATGATGATGCTAATCGAGCTCTAATGGGAGCTAATATGCAACGTCAAGCTGTACCTACCTTGCGAACTGATAAAC CATTAGTCGGTACTGGTATGGAACGTATTGTAGCTGTTGACTCTGGAGTAACAGTTGTAGCTAAACGTGGTGGCATAGTT CAGTATGTTGATGCTTCTCGTATTGTTATTAATGTTCACTCTGATGAAATGTATTCAGGTGAGGCAGGTATCGATATTTA CCATATGACAAAATATATTCGTTCTAATCAGAATACATGCATTAGTCAAAAGCCTTGCGTCACATTAGGGGAACTAGTAG AGCGTGGTAATGTCTTAGCTGATGGTCCATCTACCGACCTAGGAGAATTAGCATTAGGACAAAATATGCGTATTGCCTTC ATGCCTTGGAATGGTTATAACTTTGAAGATTCTATGCTCGTATCTGAAAGAGTAGTGCAAAAAGATTGTTTTACAACAAT TCATATCCAAGAATTAGCATGTATGTCACGTGATACGAAATTAGGGCCTGAGGAAATTACGTCGGATATACCTAATGTAG GTGAAGCAGCATTATGTAAATTGGATGAGTCAGGAATTGTCTATATTGGAGCTGAAGTTACTAGTGGAGACATATTAGTA GGTAAGGTAACCCCTAAAGGTGAAACTCAACTGACACCAGAAGAAAAACTATTGCGTGCTATTTTTGGTGAAAAAGCATC AGATGTTAAAGATTCATCATTAAGAGTACCAAATGGTTATTCGGGTACAGTGATAGACGTACAAATTTTTACCCGTGATG GTGTTAAAAAAGATAAGAGAACTCTAGAAATAGAGGAAATGCAGTTACAACAAGCAAAAAAAGACCTTACAGAAGAGCGA CGTATCTTTGAAGCTGCTTTATTTACTCGTATTCGTCATGTACTAGGTTCTGATATTACTAATATAGATATAGTTAAAAT TTTAAAATTAAAACGAGAAGATTGGTCTCAATTTAATATTAAAGATAACAATAAATATTGTCAGTTAGAACAACTAGCTG AGCAGTATTACGAGTTAAATAAAGTATTTGCAAATAAATTAGAAGAAAAACGGCGCAAAATTACTCAAGGTGATGATTTA TCCCCTGGTGTTTTAAAAATAGTAAAAGTTTATATTGCTGTTAAAAGGCAAATACAACCTGGTGATAAAATGGCCGGTCG TCACGGTAATAAAGGGGTTATATCAAAAATCAACCCAATTGAAGATATGCCATATGATGAAAAAGGTATACCAGTAGATA TAGTTTTAAACCCATTAGGTGTGCCTTCACGTATGAATATCGGTCAGATTCTTGAAACTCATTTAGGAATGGCTGCTAAA GGTATTGGTGATAAGATCAATAAGATGTTGAAACAACATAAAAATGCTGAACAACTACGTCAATTTATTCAAAAAGCTTA TGATATAGGCGATCAAGTAAGACAAAAGGTTAATCTAAATCTTTTTTCTGACCAAGAAATATTATTGTTAGCAGAAAACT TAAAACATGGTATGCCAATGGCGACTCCAGTGTTCGATGGCGCTAAAGAAAAAGAAATCAAACAAATGTTGCAATTAGCA GAATTACCAGTATCTGGTCAAATCACTTTATTTGATGGTAGGACTGGTGAACCATTCGAACGACAGGTGACAGTAGGTTA TATGTATATGTTAAAACTTAATCATCTTGTTGATGATAAGATGCATGCTAGATCAACTGGCTCTTATAGTTTAGTAACTC AGCAACCACTTGGTGGTAAGGCACAGTTTGGTGGTCAGCGTTTTGGTGAAATGGAAGTTTGGGCATTAGAAGCTTATGGT GCGGCATATACTTTACAAGAGATGCTAACAGTTAAATCAGATGATGTTAATGGTCGCACAAAAATGTATAAAAATATTGT TGATTGTAATCACACTATGGAGCCTGCAATGCCAGAATCTTTCAACGTTCTATTAAAGGAAATTCGCTCTTTAGGTATTA ACATTGAGCTAGAAAAAAATTAA Protein sequence : MLYSYTEKKRIRKDFGKRSQVLDVPYLLSIQLESFQKFIERDNEGQHGLEAAFRSVFPIQSYSGNAELQYVSYHLGEPVF DVKECQTRGLTFSAPLRVILRLIIRDATTETPIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKI HSSGKVLFNARIIPYRGSWLDFEFDQKDHLFVRIDRRRKLPATIILRALQLSTNQILDTFFEKVIFHLNDEHIQMELVPE RLRGETASFDIIANGTIYVNKGRRITARHIHQLKIDSIDRINVPREYLVGKIIAIDYIHDNTGEIIVPANIEITLEILDK LGKANFKRIETLFTNDLDHGAYISETLRIDSTRDRLSALVEIYRMMRPGEPPTREAAENLFENIFFSEDRYDLSAVGRMK FNRALLREEIEGSGLLSKSDIIEVMKKLIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRVERAVKERLSLSDL ESLMPQDIINAKPISAAIKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP EGPNIGLINSLSVYAKTNEYGFLETPYRLVHNSVVTEEIHYLSAIEEGNFIIAQANTNLDDKGNFVEELVTCRHKGESGF FSREKVHYMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRTDKPLVGTGMERIVAVDSGVTVVAKRGGIV QYVDASRIVINVHSDEMYSGEAGIDIYHMTKYIRSNQNTCISQKPCVTLGELVERGNVLADGPSTDLGELALGQNMRIAF MPWNGYNFEDSMLVSERVVQKDCFTTIHIQELACMSRDTKLGPEEITSDIPNVGEAALCKLDESGIVYIGAEVTSGDILV GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGYSGTVIDVQIFTRDGVKKDKRTLEIEEMQLQQAKKDLTEER RIFEAALFTRIRHVLGSDITNIDIVKILKLKREDWSQFNIKDNNKYCQLEQLAEQYYELNKVFANKLEEKRRKITQGDDL SPGVLKIVKVYIAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDEKGIPVDIVLNPLGVPSRMNIGQILETHLGMAAK GIGDKINKMLKQHKNAEQLRQFIQKAYDIGDQVRQKVNLNLFSDQEILLLAENLKHGMPMATPVFDGAKEKEIKQMLQLA ELPVSGQITLFDGRTGEPFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG AAYTLQEMLTVKSDDVNGRTKMYKNIVDCNHTMEPAMPESFNVLLKEIRSLGINIELEKN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 67 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 84 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 84 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 84 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 84 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 84 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 84 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 71 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 68 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 67 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 67 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 67 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 67 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 67 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 67 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 65 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 63 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 63 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | CP003583.1.gene2745. | Protein | 0.0 | 47 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | AM180355.1.gene120.p | Protein | 0.0 | 47 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | AE016830.1.gene3155. | Protein | 0.0 | 46 |
| rpoB | YP_588937.1 | DNA-directed RNA polymerase, beta subunit | NC_012469.1.7686402. | Protein | 0.0 | 45 |
