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Name : secD (PSEEN1002) Accession : YP_606720.1 Strain : Pseudomonas entomophila L48 Genome accession: NC_008027 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1054970 - 1056832 bp Length : 1863 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGAACAAATACCCTCTGTGGAAATACCTGCTGATCGTGGTGGTACTGGCGGTCGGCTTCATTTATTCCGCACCCAA CCTCTACCCGGATGATCCGGCGGTGCAGATCAGCGGCGCCAGTTCCGCCCTGCATGTCAGCCAGGCCGACCTCGACCGCG TCACTAAGGCGCTGACCGATGCCGGCATCACCGTGAAAGGCGGCAGCCTGGGCGAGAAGGGCAGTGCGCTGGTGCGCCTG ACCAACCAGGAAGATCAGTTGCCGGCCAAGGATGTGGCGCGCAAGGCACTCGGTGACGACTATGTCGTGGCCCTGAACCT GGCCCAGACCACCCCGCAGTGGCTGCGCAGCCTGGGTGCCAGCCCGATGAAGCTGGGTCTGGACCTGTCCGGTGGTGTGC ACTTCCTGTTGGAAGTGGACATGGACAAGGCCATGACGGCCCGCATGAAAGTCTACGAAGGCGAGGTCAAGACCTTGCTG CGCAAAGAGCGCGTCCGCTACCGCAGCCTGCCCCAGCAGGACGGCGGCATCATGCTGGGCTTCGCCGACGACGCTACCCG CGAGCAGGCACGTGCCCTGATCCGCAAGAATTTCAATGATTTCGACCTGACCACCACCGAGCGCAACGAGCTTGCCGTGC TGCGTCTGGCGCTGACTCAGGCGAAAGTCGCCGAGATCCGCGAATACTCGATCAAGCAGAACCTGACCACCGTCCGCAAC CGTGTCAACGAGCTGGGCGTGGCCGAGCCGCTGGTGCAGCGCCAGGGCGCCAACCGCATCGTGGTCGAGCTGCCGGGCGT GCAGGACACCGCCGAAGCCAAGCGTATCCTCGGCAAGACCGCCAACCTGGAGTTCCGCTTCGGCGCCGAACCCGGCGCGT CGAAAGCCACCACCGAGGTGTTCGAGTTCCGCGAAGGCGGCCGCTCCGCCGCGGTCGAGCGCGGCCTGATCATCACCGGT GACCAGGTCACCGACGCCCAGGCCAGCTTCGACGAACACGGTCGCCCACAGGTGAACATCCGCCTGGATGGCCACGGTGG CGAGCTGATGAGTCGCGCCACCCGCACCAACGTCGGGCGCAGCATGGCGGTGATCTTCATCGAGCAGAAGCCGGTCACCC GTTACGTCAAGCAGACCGTCGACGGCGTCGAGAAAGAAGTCGCGGTGCAGACCTTCCAGGAAGAGAAGAAGATCATCAGC CTGGCGACCATCCAGTCGCCGCTGGGCAGCCAGTTCCGCATCACCGGCCTGAACGGCCAGGGCGAATCGTCCGAACTGGC CCTGCTGCTGCGTGCCGGTGGCCTGGCCGCGCCGATGTACTTCGCTGAAGAGCGCACCATCGGCCCGAGCCTGGGTGCCG ATAACATCACCAAGGGTATCGACGCGTCCCTGTGGGGCATGTTGTTCGTCTCGCTGTTCATCATCGCCATCTACCGTGGC TTTGGTGTGCTGGCCACCATCGCCCTGGCGGGCAACATGGTCCTGCTGCTGGCGCTGATGTCGCTGCTGGGCGCCACGCT GACGCTGCCGGGTATCGCCGGTATCGTGCTGACCATGGGTATGGCGGTGGACGCCAACGTGCTGATCTTCTCGCGTATCC GCGAAGAGATCGCTGCCGGCATGTCGGTGCAGCGCGCCATCCACGAAGGTTTCAACCGCGCCTACTCGGCGATCGTCGAT GCCAACCTGACCACCCTGCTGGTCGGCGGTATCCTGTTCGCCATGGGTACCGGCCCGGTCAAGGGCTTCGCGGTCACCAT GTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCACTGGTCAACCTGACCTGTGGCGGGCGTG ACATCAAGAAGCTGTGGGTTTGA Protein sequence : MLNKYPLWKYLLIVVVLAVGFIYSAPNLYPDDPAVQISGASSALHVSQADLDRVTKALTDAGITVKGGSLGEKGSALVRL TNQEDQLPAKDVARKALGDDYVVALNLAQTTPQWLRSLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLL RKERVRYRSLPQQDGGIMLGFADDATREQARALIRKNFNDFDLTTTERNELAVLRLALTQAKVAEIREYSIKQNLTTVRN RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTEVFEFREGGRSAAVERGLIITG DQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRTNVGRSMAVIFIEQKPVTRYVKQTVDGVEKEVAVQTFQEEKKIIS LATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRG FGVLATIALAGNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVD ANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKLWV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
