|
Name : TM1040_2502 (TM1040_2502) Accession : YP_614496.1 Strain : Ruegeria sp. TM1040 Genome accession: NC_008044 Putative virulence/resistance : Unknown Product : D-lactate dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 2644053 - 2645501 bp Length : 1449 bp Strand : - Note : PFAM: FAD linked oxidase-like: (2.7e-68); KEGG: sil:SPO3478 glycolate oxidase, GlcD subunit, ev=0.0, 86% identity DNA sequence : ATGGAGATGCCACCCCCCAATGCCGCCATCCTGTCCTTGAAGGCAGAGCTTTTGCAGCGCCTGCAACAGGTGTTGCCAAA GGATGCGCTGATTTCGGATGAAGCAGAGACACGCGCGTATGAGTGTGACGCGCTGACGGCCTATAAATGTCCGCCGATGC TGGCGGTTCTGCCGCGCTCTACTCAGGAAGTGTCAGACGTTCTGCGGATATGTCACCAGATGAATGTACCCGTTGTACCG CGTGGAGCTGGAACATCGCTGGCGGGGGGCGCATTGCCTACCGCAGACTGCGTAATCCTCGGGGTGGCGCGGATGAACGA GGTGCTGGAGACGGACTACGACAATCGTGTCATCCGTGTTCAGACCGGGCGCACCAACCTGTCGGTGTCCGGCGCCGTGG AAGAAGAGGATTTCTTTTATGCGCCTGACCCCTCTTCACAGCTCGCCTGTGCGATTGCTGGCAACATCGCAATGAATTCC GGTGGGGCGCATTGTCTCAAATACGGGGTGACGACCAACAACCTTCTTGGGGTCACCATGGTGATGATGGACGGAACGGT TGTCGAAATAGGTGGCGCGCATCTGGATGCCGGTGGGCTTGATCTCCTCGGGGTGATCTGCGGCAGTGAGGGGCAGCTGG GCGTGGTGACCGAAGCCACCCTCCGGATTTTGCGCAAACCCGAAGGGGCGCGGCCCGTGCTTGTGGCCTTTGACAGCAAT GAAGTCGCTGGGGCCTGTGTTTCTGATATCATCAAAGCGGGCGTTCTGCCGGTGGCGATTGAGTTCATGGACCGTCCTTG CATTGAAGCCTGCGAAGCGTTTGCCAAAGCGGGCTATCCGATGTGCGAAGCTTTGCTGATCATCGAAGTCGAAGGGTCAG AAGCAGAAATCGACCATCAGCTGAAGCTCATCACCGAGATCGCGCGGCGCCACAACCCGGTGGAGTTGCGCGAAGCGGGG GATTCCGAGGAAGCCGCGCGCATCTGGCTTGGACGCAAATCCGCGTTTGGTGCGATGGGACAGATCAACGACTACATGTG TCTTGATGGGACGATTCCCGTTTCTGCCCTGCCGCAGGTTCTGCGTCGCATCGGGGAGATGAGCGCGGAGTTCGGCCTGA AAGTGGCAAACGTGTTTCACGCAGGGGATGGCAACATGCACCCGCTGATCCTGTTTGATGCCAACAAACCCGGTGATCTG GAGCTGTGCGAAGCCTTCGGGGCCGAGATCCTGAAGCTCTGTGTCGAGGTCGGGGGGTGTCTGACCGGCGAACACGGCGT TGGGATCGAAAAGCGAGATCTGATGCTGCATCAATATGCACTTGCTGACATCGAAGCCCAGTTGCGCGTGAAGGATGTGT TTGACCCGAAGTGGCTGTTGAACCCGGCAAAGGTCTTTCCGCTGTCAACCACGCAGAGCCGGCGCAACGTCGCGATTGCG GCGCAGTAG Protein sequence : MEMPPPNAAILSLKAELLQRLQQVLPKDALISDEAETRAYECDALTAYKCPPMLAVLPRSTQEVSDVLRICHQMNVPVVP RGAGTSLAGGALPTADCVILGVARMNEVLETDYDNRVIRVQTGRTNLSVSGAVEEEDFFYAPDPSSQLACAIAGNIAMNS GGAHCLKYGVTTNNLLGVTMVMMDGTVVEIGGAHLDAGGLDLLGVICGSEGQLGVVTEATLRILRKPEGARPVLVAFDSN EVAGACVSDIIKAGVLPVAIEFMDRPCIEACEAFAKAGYPMCEALLIIEVEGSEAEIDHQLKLITEIARRHNPVELREAG DSEEAARIWLGRKSAFGAMGQINDYMCLDGTIPVSALPQVLRRIGEMSAEFGLKVANVFHAGDGNMHPLILFDANKPGDL ELCEAFGAEILKLCVEVGGCLTGEHGVGIEKRDLMLHQYALADIEAQLRVKDVFDPKWLLNPAKVFPLSTTQSRRNVAIA AQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 2e-94 | 48 |
