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Name : secD (Patl_1230) Accession : YP_660810.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1479262 - 1481106 bp Length : 1845 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAACCAAACTCCGTTATGGAAGTATCTCGTACTGATTTTTATCGTCGGTATGTGTGCTCTATACGCTACTCCCAA TTTGTACGGTGAAGACTATGCCGTTCAAATCTCTGCGGGCCGAAATGCCAGTGTCGATGAGTCACTGTTAAGCAAAGTCA CAGAAACGTTATCTAGCGAGAATATAGAAACAAAAAATATCGCTTTAGATAATGAACAAATCTTGGTTCGCTTGACCAAT TCTGATAGTCAACTTATCGCGCGAGAAACCCTGCAACGAGCATTAGGTGATGACTACTACGTGGCCATGAACCTAGCCCC AGACACGCCAGCATGGCTTGAAGCCATTGGCGGTGCACCGATGAAGCTTGGGCTCGATTTGCGCGGTGGTGTGCACTTCC TAATGGAAGTGGACATGAACTCAGCAGTCAATAAGTCTTTTGAAGATATGGTATCCGATTTTAGAAGTGCACTTCGTGAA GAAGGTATTCGCTATCGCACAGTGCGCCAAGTTGAAGGTGGAGTGGAAATATTCTTCCGTGACCAAGATACCCTAGATAA GGCAGAGTTCTTTTTACGTAACCGTAATCGTGACTTGGTTTTCACTGAGAAAAATGACCTAAAAATCGTGGTCAGTATGT CAGAGCAGAAGCTTGCTGAAACCCGTGATTACGCGGTTAAGCAGAACATCACCATTATCCGTAACCGGGTAAACCAACTG GGTGTAGCTGAGCCAAGTGTACAAAAGCAAGGCGTTGACCGCATCGCTGTGCAATTACCTGGCATACAAGATACTGCCCG TGCTAAAGAAATTCTAAATGCAACGGCGACCTTGGAATTCCGCTCTGTAGATTTAGACCATGATGTACGTGATGCTGTTG CTGGGCGTGTACCTGCAGGCTCTGAACTGGTACTCGATCAGCAAGGTCAGCCGCAACTGCTGAAAAAGAAAATCATTCTG ACCGGTAACCACATCATTGATGCTAACTCTAGCGCAGATGAGTACGGTATTCCTCAGGTGAATATTTCACTTGATTCTAA AGGTGGCAGTAAGATGTCACAGTTTACCAAAGACAGTATTGGTAAGCCGATGGCGACCGTCTTTATTGAATATAAATCAA CGGGTGAGCGAGATGCTAACGACAAGCTGATTTTTGAAGCGAAGCGTGAAGTGATCAGTATCGCTACCATTCAAGCGCGC TTGGGCAGTAGTTTCCGTATTACCGGGTTAGACTCGCCACAAGAAGCGCATAACCTGTCGCTACTACTCAGAGCTGGTGC ACTGATAGCACCGATTCAAATCGTCGAAGAGCGCACCGTTGGGCCAAGCTTAGGTAAAGAGAACATCGCACTGGGTACAC AAGCCATCATTTGGGGCTTTGTCGCAGTACTAATCTTTATGCTGATTTACTACAAAGCATTTGGTTTGGTCGCGAACCTT GCTCTGACTCTAAACCTAGTGATGATCGTTGGCATTATGTCGATGATACCGGGCGCGACATTATCGCTACCTGGTATGGC CGGGATCGTGTTAACGGTCGGTATGGCGGTTGATGCAAACGTTCTGATATTCGAGCGTATCCGAGAAGAACTACGGGAAG GGCGCAGCCCCCAACAGGCAATTCATCACGGTTATGACAGTGCATTCTCGACCATTCTTGATGCCAACATTACAACTTTC ATTGCGGGTCTGATTCTGTTTGCTGTGGGCACAGGCCCAATTAAAGGCTTCTCGATCACGTTAATGATTGGTATTGCCAC TTCCATGTTTACCGCTATTTTTGTTACCCGTGCTGTTGTAAATGCATGGTGTGGTGGTAAGCCTTTGAAAAAATTATCAA TATAG Protein sequence : MLNQTPLWKYLVLIFIVGMCALYATPNLYGEDYAVQISAGRNASVDESLLSKVTETLSSENIETKNIALDNEQILVRLTN SDSQLIARETLQRALGDDYYVAMNLAPDTPAWLEAIGGAPMKLGLDLRGGVHFLMEVDMNSAVNKSFEDMVSDFRSALRE EGIRYRTVRQVEGGVEIFFRDQDTLDKAEFFLRNRNRDLVFTEKNDLKIVVSMSEQKLAETRDYAVKQNITIIRNRVNQL GVAEPSVQKQGVDRIAVQLPGIQDTARAKEILNATATLEFRSVDLDHDVRDAVAGRVPAGSELVLDQQGQPQLLKKKIIL TGNHIIDANSSADEYGIPQVNISLDSKGGSKMSQFTKDSIGKPMATVFIEYKSTGERDANDKLIFEAKREVISIATIQAR LGSSFRITGLDSPQEAHNLSLLLRAGALIAPIQIVEERTVGPSLGKENIALGTQAIIWGFVAVLIFMLIYYKAFGLVANL ALTLNLVMIVGIMSMIPGATLSLPGMAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIHHGYDSAFSTILDANITTF IAGLILFAVGTGPIKGFSITLMIGIATSMFTAIFVTRAVVNAWCGGKPLKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-115 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-115 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-115 | 47 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-115 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-115 | 47 |
