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Name : secD (Patl_4203) Accession : YP_663756.1 Strain : Pseudoalteromonas atlantica T6c Genome accession: NC_008228 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 5062544 - 5064370 bp Length : 1827 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCGAAAAACAACAGCAAAGCCCAAGTACACTTGGCAAATTTTGGTGATTATCGTCACCGTTATCATTTTAGGCTTAAA TGCCATTCCGACGTTTTATGGCAATCACAATGCCTTACTCGTCAGTGCAGTTAACCCAACACAGTCATTGCCCAATACGC AAACGTTACGCAAGGCAGTACAACAGCAGAACATCAACGTAGAGCAAATCATCAATAGTGAATCGAGTAGTAAAATCGTT ATTGACGGAGACGACGAAGCTTTACTCGTAGCGCAAAGCCAACTTAAAACGACCTTAGGCGACGACTTTCAAGTACGCTT AGGCAGCCAGTCAGCCGCACCAAAATGGTTACAAGGCATGGGAATGTCCCCCATCAAGCTTGGCTTAGATTTAAGCGGCG GCGTGTTATTTGTGCTTGAGGTCGATACTCATAAAGCCGACCAAGAACGTTTAGGCAACGCAAAGGACGAAGCGCTGCAG CTTATCCATGATAAAGGTTTGCGTGGTATGAGCGTGAAGCTAGCCGACTCACAAGAGAAGATTAACCTTCACTTTCTCAC TCACCAAGCAAGCCAAGTCAAAAAGGTGGTCAATGAGTTACAACAGCAACTACCCGGCATAACCTATACCGCAAGCGGCG ATCGCGATGCCGCGCTGGTATTTTCAGATCAAAGTGTCACTACCTTTCATCATGAAATTATGGCCCAAGCTCTGACCACC CTGCGCGGGCGTATTGAAGAGCTTGGCATCACAGAAGCCGTTACCCAGCGCCAAGGTCAAAACAGAATACGTATTGAGTT ACCAGGGGTGAAAGATCCAGAGCAAGCCAAGCGTATTATCGGTGCCACCGCATCGCTGGATTTCTACGAAATGGCCCAAA GCGGCACAGTGGGAGCCAAAACCTTTACTGATGAAAATGGTCGTCGTCTGCGCTTGGCACCTAAACCCATTTTCACTGGC TCAAATATCGAAAATGCGACCTCAGGGCGTGATGAGATGGGTATTGCACTAGTAAACCTAGCGCTTGACGGCATCGGTGG TAAGAAGATGTCTGACTTCTCTAAAGACAATATTGGCAATCCTATGGTCACAATATTCTCTGAATACCATAAAAACAGCG CAGATGAGATGGTCAAAAGCAGCAAGGTCATTAGTGTAGCAACCATTCAAAGTCAGTTAGGCAACCGCTTTAGCATCACC AATTTAGATAGCCCACAAGCGGCTTCCGATCTCGCTTTATTATTGCGTGCAGGCTCACTAGATGCACCTATCACCATAGT GCAGCAACGCACCATTCAAGCGTCGTTAGGACAAGAAAACGTCGGTAATGGCATCATGGCACTCGCTATAGGCTTGGGTT TTACGTTGGTCTTTATGGGCTTGTGGTACCGCAAATTAGGGCTTATCGCCAATACCAGCTTGATTCTTAACTTAGTATGT TTATTAGGCTTAATGGCGCTATTGCCCAATGTTGTACTGACCCTACCCGGCATCGCTGGTTTGGTGCTCACCGTGGGCAT GGCGGTCGATACTAACGTGTTGATCTTTGAGCGTATAAAAGAAGAGCGAAAACGCGGGCGGAGTAACTTTTTGGCGATTG AAACGGGCTACAAAGAAGCCTTCGCCACTATTTTAGACGCCAACGTCACCACCATGATCACCGCCCTCATACTGTTGAGT ATCGGTTATGGGCCAGTCAAAGGATTTGCGATGACCTTAAGTTTGGGCATTTTAACCAGTATGTTTACCGGCGTATTCGT TGCTCATGTATTGACGTCATTGGTTAAACCGCAAATAGCCATCAAACAAAAGGAGCTAAGATCATGA Protein sequence : MRKTTAKPKYTWQILVIIVTVIILGLNAIPTFYGNHNALLVSAVNPTQSLPNTQTLRKAVQQQNINVEQIINSESSSKIV IDGDDEALLVAQSQLKTTLGDDFQVRLGSQSAAPKWLQGMGMSPIKLGLDLSGGVLFVLEVDTHKADQERLGNAKDEALQ LIHDKGLRGMSVKLADSQEKINLHFLTHQASQVKKVVNELQQQLPGITYTASGDRDAALVFSDQSVTTFHHEIMAQALTT LRGRIEELGITEAVTQRQGQNRIRIELPGVKDPEQAKRIIGATASLDFYEMAQSGTVGAKTFTDENGRRLRLAPKPIFTG SNIENATSGRDEMGIALVNLALDGIGGKKMSDFSKDNIGNPMVTIFSEYHKNSADEMVKSSKVISVATIQSQLGNRFSIT NLDSPQAASDLALLLRAGSLDAPITIVQQRTIQASLGQENVGNGIMALAIGLGFTLVFMGLWYRKLGLIANTSLILNLVC LLGLMALLPNVVLTLPGIAGLVLTVGMAVDTNVLIFERIKEERKRGRSNFLAIETGYKEAFATILDANVTTMITALILLS IGYGPVKGFAMTLSLGILTSMFTGVFVAHVLTSLVKPQIAIKQKELRS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-73 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-73 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-73 | 41 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-73 | 41 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-73 | 41 |
