Gene Information

Name : rsaD (CHU_2233)
Accession : YP_678838.1
Strain : Cytophaga hutchinsonii ATCC 33406
Genome accession: NC_008255
Putative virulence/resistance : Resistance
Product : lipoprotein releasing ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2600990 - 2601595 bp
Length : 606 bp
Strand : -
Note : -

DNA sequence : 
GTGTTAAAAGGCATTGATTTTTCTGTTCAGCAAGGTGAAGTTGTATCCATCGTCGGGGCTTCCGGAGCCGGCAAAAGCAC
ACTTCTTCATATTCTGGGAAGTCTGGATCGTCCGGATACAGGATGGGTGAAGATCAAGGATGAAGAAATTTCTGCTATGA
ATGATAAAACGTTATCTGCTTTCCGTAATCAGCATATCGGTTTCATCTTCCAGTTTCATAATTTATTGCCCGAGTTTACA
GCGGTAGAAAATGTATTGCTGCCTGCTATGATTGGCAAGCGCAATCTCAAAGAAGCTGAAAACCGTGCGAAAGATTTGTT
ACGTTTTCTGGGTTTGGATCATCGTTTTACACATTACCCAAATCAATTATCCGGCGGCGAACAGCAACGTGTAGCTGTAG
CCAGGTCATTGATCAATGATCCGCTGATTGTATTTGCCGATGAACCAAGCGGTAATTTAGATACACACAATGCAGAAGAA
TTACATCAGTTATTTTTTGATCTGCGTAAAACATATAATCAAACATTTGTGATCGTAACACACAATGAAAAACTTGCCGA
TTTATCAGACCGTAAAGTGGTCATGCAGGACGGCGTAATCATTTAA

Protein sequence : 
MLKGIDFSVQQGEVVSIVGASGAGKSTLLHILGSLDRPDTGWVKIKDEEISAMNDKTLSAFRNQHIGFIFQFHNLLPEFT
AVENVLLPAMIGKRNLKEAENRAKDLLRFLGLDHRFTHYPNQLSGGEQQRVAVARSLINDPLIVFADEPSGNLDTHNAEE
LHQLFFDLRKTYNQTFVIVTHNEKLADLSDRKVVMQDGVII

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-33 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 45
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-31 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rsaD YP_678838.1 lipoprotein releasing ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 7e-38 45
rsaD YP_678838.1 lipoprotein releasing ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 5e-38 42
rsaD YP_678838.1 lipoprotein releasing ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-33 42