Gene Information

Name : lolD (SFV_1137)
Accession : YP_688651.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Resistance
Product : lipoprotein transporter ATP-binding subunit
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1182455 - 1183141 bp
Length : 687 bp
Strand : +
Note : outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone

DNA sequence : 
TTGCAATGCGACAACCTGTGCAAACGCTATCAGGAAGGCAGTGTGCAAACCGATGTGCTGCACAATGTCAGTTTCAGCGT
GGGCGAAGGTGAAATGATGGCAATTGTCGGTAGCTCTGGTTCCGGTAAAAGTACCTTGCTGCACCTGTTAGGCGGGCTGG
ATACGCCAACCTCCGGCGATGTGATCTTTAACGGTCAGCCGATGAGCAAACTGTCTTCAGCGGCGAAAGCAGAACTGCGC
AACCAGAAGCTGGGCTTTATTTATCAGTTTCACCACCTGCTGCCGGATTTTACTGCCCTGGAAAACGTGGCTATGCCACT
GCTGATTGGCAAGAAAAAGCCCGCTGAAATCAACAGCTGTGCACTGGAGATGTTAAAAGCGGTGGGGCTGGAGCATCGTG
CGAATCACCGCCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTAGCGATTGCCCGTGCGCTGGTCAATAATCCGCGT
CTGGTACTGGCGGATGAACCTACCGGTAACCTCGATGCGCGTAACGCCGACAGCATCTTCCAGTTGCTTGGGGAGTTGAA
TCGCTTGCAGGGCACCGCTTTCCTGGTGGTCACTCACGACCTGCAACTGGCGAAACGTATGAGCCGCCAACTGGAAATGC
GTGATGGACGTCTGACGGCGGAACTGAGCCTGATGGGGGCGGAGTAA

Protein sequence : 
MQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR
NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSCALEMLKAVGLEHRANHRPSELSGGERQRVAIARALVNNPR
LVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSLMGAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 6e-26 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_688651.1 lipoprotein transporter ATP-binding subunit NC_008702.1.4606598. Protein 1e-36 48
lolD YP_688651.1 lipoprotein transporter ATP-binding subunit NC_012469.1.7686878. Protein 4e-41 46