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Name : rnhA (SFV_0199) Accession : YP_687781.1 Strain : Shigella flexneri 8401 Genome accession: NC_008258 Putative virulence/resistance : Unknown Product : ribonuclease H Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0328 EC number : 3.1.26.4 Position : 227660 - 228238 bp Length : 579 bp Strand : - Note : degrades RNA of DNA-RNA hybrids, participates in DNA replication; An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids DNA sequence : GTGGTTTCGGTATCGAGAACGATCTGGCGTGTAATTGCAGTGCTCATAGCGGTCATTTATGTCAGACTTGTCGTTTTACA GTTCGATTCAATTACAGGAAGTCTACCAGAGATGCTTAAACAGGTAGAAATTTTCACCGATGGTTCGTGTCTGGGTAATC CTGGACCTGGGGGTTACGGCGCTATTTTACGCTATCGCGGACGCGAGAAAACCTTTAGCGCAGGCTACACCCGCACCACC AACAACCGTATGGAGTTGATGGCCGCTATTGTCGCGCTGGAGGCGTTAAAAGAACATTGCGAAGTCATTTTGAGTACCGA CAGCCAGTATGTCCGCCAGGGTATCACCCAGTGGCTCCATAACTGGAAAAAACGTGGCTGGAAAACAGCAGACAAAAAAC CAGTAAAAAATGTCGATCTCTGGCAACGTCTTGATGCTGCATTGGGGCAGCATCAAATCAAATGGGAATGGGTTAAAGGC CATGCCGGACACCCGGAAAACGAACGCTGTGATGAACTGGCTCGTGCCGCGGCGATGAATCCCACACTGGAAGATACGGG CTACCAAGTCGAAGTTTAA Protein sequence : MVSVSRTIWRVIAVLIAVIYVRLVVLQFDSITGSLPEMLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTT NNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWLHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG HAGHPENERCDELARAAAMNPTLEDTGYQVEV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rnhA | AAO17224.1 | RnhA | Not tested | tcd island | Protein | 8e-54 | 75 |
