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Name : clpB (ABO_0479) Accession : YP_692199.1 Strain : Alcanivorax borkumensis SK2 Genome accession: NC_008260 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 519451 - 522048 bp Length : 2598 bp Strand : + Note : Specificity unclear DNA sequence : ATGCGAATGGATAAACTCACTGCCCGCCTGCAGGAAGCGCTGTCAGACGCGCAATCCTTGGCCGTGGGGCAGGGTAATAG CACCATTGAGCCAGTTCATCTGATGTTGGCGTTGATGCAGCAGCAGGGAGGCGCCGCTCGGCCGTTGTTGGAAAAAGCAG GCGCCAACGTTGCCGATGTGATTACCGCCCTGAACATGGCTGTGGACAAGCTGCCCACGGTGACTAACTTCAATGGTGAT GTGCAGATGGGACAAGCCACCGGGCGGATGCTGAATATTGCCGACCGGGAAGCTCAGCAGCGCGGTGACCAGTATCTTTC TACGGAAGTGGTGTTGCTGGCGGCCTGTGACGATAGCGGTGAGCTGGGTAAGCTGTTTAAGAATGCCGGCGTCACTCGTA AGGTGCTGGCTGAAAAAATTGCTGAAGTACGAGGGGGCGAAACGGTGAACGATCCCAACGCGGAAGACAAACGTGAAGCG CTAGATAAGTACACCGTGAACCTGACCGAGCGAGCGGAATCCGGCAAGCTTGACCCGGTGATCGGCCGGGACGACGAAAT TCGCCGTACTATTCAGGTCTTGCAGCGTCGCACCAAGAACAACCCGGTATTGATCGGTGAGCCCGGGGTGGGCAAGACCG CCATTGTCGAAGGCCTTGCTCAGCGTATTGTGAATGGCGAAGTCCCTGAAGGCTTGAAGGACAAGCAAGTGCTCTCGCTG GATATGGCCGCGCTGATCGCGGGTGCTAAATATCGAGGAGAGTTCGAAGAGCGCTTGAAAGCGGTACTCAACGAGTTGGC TAAGCAGGAAGGGCGCATCATTCTTTTCATTGATGAGCTGCATACCATGGTCGGCGCCGGCAAGGGTGAAGGGTCCATGG ATGCGGGCAATATGCTCAAGCCGGCACTGGCTCGGGGTGAGCTGCACTGTGTGGGTGCTACCACGCTGGACGAATACCGG CAGTACATTGAGAAAGATGCCGCGCTGGAGCGTCGTTTTCAGAAAGTGCTGGTGGATGAGCCCACGGTGGAAGACACCAT TGCCATTCTGCGGGGCTTGAAAGAGCGTTACGAAGTTCACCATGGCGTGGACATCACCGATGGCGCCATCATTGCCGCTG CTCGCTTGAGTCATCGCTACATTACCGATCGACAACTGCCGGATAAGGCCATTGATCTGATCGACGAGGCCGGCAGCCGT ATCCGTATGGAAATCGACTCTATGCCGGAGGAAATGGACCGCCTAGATCGCCGTTTGATCCAGCTGAAAATGGAGCGTGA AGCGCTGCGCAAGGAAGACGATGATGCCAGCCGCAAGCGGCTGGAAAAGCTGGAAGATGAGATTGATGAGCTGGAAAAAG AGTACGCGGATCTAGAGGAAATTTGGCAGGCGGAGAAAGCCGCGTTGCAGGGCGCAGCCGAATATAAGGCGGAGCTGGAG CAGGCTCGTGTGGAGCTGGAGCAGGCCCGTCGCGCCGGCGACCTGAGCCGTATGTCCGAACTGCAGTACGGCGAAATTCC GGAACTGGAAAAGAAAGTTCAGGATGCCCAGGACCGGGAAGAACAAGCCCAAACTGAGACGCAGCTGCTGCGTAACAAGG TCACCGACGAGGAAATTGCTGAGGTGGTGGCCAAGTGGACCGGCATTCCTGTATCGAAAATGTTGGAAGGTGAGAAAGAC AAGTTGCTGCGTATGGAAGATGCCTTGCATGATCGGGTGGTCGGCCAGAATGAGGCTGTTGAGGCGGTGGCTAATGCGGT ACGCCGCTCCCGGGCAGGGTTGTCAGATCCGAATCGACCCAACGGCAGCTTCCTGTTTCTGGGCCCCACCGGGGTGGGTA AAACGGAACTTTGTAAGGCGCTGGCCAACTTCCTGTTCGACACCGAAGAGGCCATGGTTCGCATCGACATGTCTGAGTTT ATGGAAAAACATTCCGTGGCTCGGCTGGTCGGTGCCCCTCCGGGCTATGTGGGTTATGAGGAAGGCGGCTACCTCACCGA GTTAGTGCGACGTAAACCTTACTCGGTGGTGTTGCTGGACGAGGTGGAAAAAGCCCACCCGGATGTGTTCAACATTCTGT TGCAGGTGCTCGATGATGGTCGCCTGACGGATGGCCAAGGCCGTACCGTGGACTTCCGCAATACTGTGGTGGTGATGACA TCCAACCTGGGTTCTGATCTGATTCAGAAGCTGGCAGGTTCTGATGCCGAATCTGCTAGTGATTATGAAACGATGAAATC GGCGGTGATGGAGGTGGTAGGTAACCACTTCCGCCCGGAGTTCCTCAACCGAGTAGATGAAACCGTGGTGTTCCATCCGC TGGCCAAAGATCAGCTCAAGGGCATTGCGTCCATTCAGTTGGGTTTCTTGCGCAAGCGATTGGCGGAGCGGGAAATGAGC CTGGAGCTGAGTGATGCGGCGCTTGATCAGCTGGTGGATGCCGGTTTTGATCCCGTCTACGGGGCTCGTCCGCTTAAGCG GGCTATCCAGCAGCAGTTGGAAAATCCGCTGGCTCAATCGCTGCTGAAAGGCGAGTACGTTCAGGGCGATACCATTCACG TGGATGTGGAAGAGGGGCGGTTTACGTTTGGCCGTTAA Protein sequence : MRMDKLTARLQEALSDAQSLAVGQGNSTIEPVHLMLALMQQQGGAARPLLEKAGANVADVITALNMAVDKLPTVTNFNGD VQMGQATGRMLNIADREAQQRGDQYLSTEVVLLAACDDSGELGKLFKNAGVTRKVLAEKIAEVRGGETVNDPNAEDKREA LDKYTVNLTERAESGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKDKQVLSL DMAALIAGAKYRGEFEERLKAVLNELAKQEGRIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR QYIEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYEVHHGVDITDGAIIAAARLSHRYITDRQLPDKAIDLIDEAGSR IRMEIDSMPEEMDRLDRRLIQLKMEREALRKEDDDASRKRLEKLEDEIDELEKEYADLEEIWQAEKAALQGAAEYKAELE QARVELEQARRAGDLSRMSELQYGEIPELEKKVQDAQDREEQAQTETQLLRNKVTDEEIAEVVAKWTGIPVSKMLEGEKD KLLRMEDALHDRVVGQNEAVEAVANAVRRSRAGLSDPNRPNGSFLFLGPTGVGKTELCKALANFLFDTEEAMVRIDMSEF MEKHSVARLVGAPPGYVGYEEGGYLTELVRRKPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVVMT SNLGSDLIQKLAGSDAESASDYETMKSAVMEVVGNHFRPEFLNRVDETVVFHPLAKDQLKGIASIQLGFLRKRLAEREMS LELSDAALDQLVDAGFDPVYGARPLKRAIQQQLENPLAQSLLKGEYVQGDTIHVDVEEGRFTFGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 2e-98 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 2e-98 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_692199.1 | ATP-dependent Clp protease, ATP-binding subunit ClpB | VFG2076 | Protein | 3e-111 | 42 |
