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Name : secD (ABO_0503) Accession : YP_692223.1 Strain : Alcanivorax borkumensis SK2 Genome accession: NC_008260 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 551947 - 553860 bp Length : 1914 bp Strand : + Note : (protein-export membrane protein SecD) identified by sequencesimilarity; High confidence in function and specificity DNA sequence : ATGATTAAGAAATCGGCACTACTGGAAAGAACTATGACCCGCTATCCACGCTGGAAATTTTTCCTGCTTATGGCTGCACT CGTTGTTTGCAGCCTTTATGCGCTTCCTAATTTGTACCCGGATGCGCCTGCGATTCAGATCAGTCATTCCGAGGCTGGTG GCGAAGTGTCGGCTGTGGCTAGGCAGCGCGTATTAAGTGCCCTGGATGCCGCCGGCCTGGCCCATGGAGACGGTGAGGTT GTTGGTAGTTCATTGCTGGTGCGTATGAACGATACCGAAGCTCAGCTTCGCGCCAAGGATATTGCAGCGTCTACTTTGGG CGATAATTATGTGGTGGCGTTGAACTTGGCGGCAACCACTCCTCAGTGGTTGCGTGATATCGGCGCTAGCCCCATGAATT TGGGGTTGGATCTGCGTGGCGGGGTTCACTTCTTGCTGCAGGTGGACATGGATTCGGTGGTGAAGAGCCGCATGGAAGCC TGGGAAGGCACCGCTAAGTTGACCCTGCGTGACGCAGGGGTGCGTTATCGCGAGGTGTCTGTGGATGGCACAACCCTGAT CGCCACCTTTGGAGATCAGGTTGCTGCAGATGCAGCGCGGGCGCCATTGCGCCAGGCGCTGGACAAGCTGGCCATGCAAC CGGCCGGAGATAGCCCCAGAATTGTTATGACCCTGAACGAAACGGCCCTGAAAGAAATGCAGGACTACGCCGTAGACCAG AACCGCACCGCTTTGAACAAAAGGGTGAACGAACTGGGTGTGGCGGAAGCGGTGGTTCAGCGTCAGGGGGCAGACCGTAT CGTAGTGCAGCTGCCAGGCATCCAGGACGCGGCCACCGCGCGTCGGATTTTGGGCCGCACCGCGACGCTGGAGTTTCGTT TGGTGGACAATAGCGTGTCCTCCGCTCGCCTACGTTCTGGCATGGCGCCGCCGGGGTTGGAGTTTTTTCCGTTCAAGGGG CAAGAAGGCCGGATAGTGGCCTTGAACAAGTCCAGCATTGCCACCGGGGATCAGGTGATTGACGCCAAGATGGGCTTTGA TCAGCAGAACGGTCAACCGGAAGTCAACGTAACACTGGATTCCGATGGCGCCCGCCGTATGCAGCGTGTTACCGGCAAGA ACGTGGGTAACCCCATGGGGGTGCTGTTCATCGAAACCAAGACCGACGTGAAAAAGGTGATCGACGAAGACGGCAACAGC GTTGAGCAGATGACCAGCAGCACTGATAAGTACGTCATCAACGTGGCGACTATTCAGAGCACCCTGGGTAGCCGTTTCCG GATTACCGGGCTGGATAACCCGGCGGAAGCCTCCGAATTGGCACTGCTGCTGCGTGCCGGCTCACTGGCTGCGCCGGTGA GTATCGTTGAAGAGCGTACGGTTGGGCCGAGCTTGGGCGCGGAGAATATTGAAGCGGGCCTTAAGTCCATGGCTTTAGGG CTGGCATTAGTGCTGGCCTTCATGGTGCTTTGGTACAAAGTATTTGGCTTGATTGCTAATGTGGCGCTGCTCGGTAACTT GGTAATCATTGTTGGTGTTATGTCGTTGATTCCCGGCGCTACCATGACTCTGCCGGGTATTGCCGGGATCGTACTGACGG TGGGTATGGCGGTAGACGCTAACGTTCTGATCTTCGAACGTATTCGTGAAGATCTGCGCCGGGGTCTGAGTCCACGCCAG GCTATCGAAGAAGGTTACGCCCGTGCATTTACCACTATTCTTGATGCCAACATTACGACCCTGATTGTGGCGGTGATTTT GTTTGCAGCAGGGACCGGTTCGGTACAGGGTTTTGCGGTGACCTTGTTCATTGGCATCCTCACCTCCATGTTCACGGCGA TTATCGGTACCCGTGCCATGGCAGAAATGATTTACGGTCGAGGCGCTCGCGCCCCGAGCAAATTGAGCATCTGA Protein sequence : MIKKSALLERTMTRYPRWKFFLLMAALVVCSLYALPNLYPDAPAIQISHSEAGGEVSAVARQRVLSALDAAGLAHGDGEV VGSSLLVRMNDTEAQLRAKDIAASTLGDNYVVALNLAATTPQWLRDIGASPMNLGLDLRGGVHFLLQVDMDSVVKSRMEA WEGTAKLTLRDAGVRYREVSVDGTTLIATFGDQVAADAARAPLRQALDKLAMQPAGDSPRIVMTLNETALKEMQDYAVDQ NRTALNKRVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRILGRTATLEFRLVDNSVSSARLRSGMAPPGLEFFPFKG QEGRIVALNKSSIATGDQVIDAKMGFDQQNGQPEVNVTLDSDGARRMQRVTGKNVGNPMGVLFIETKTDVKKVIDEDGNS VEQMTSSTDKYVINVATIQSTLGSRFRITGLDNPAEASELALLLRAGSLAAPVSIVEERTVGPSLGAENIEAGLKSMALG LALVLAFMVLWYKVFGLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREDLRRGLSPRQ AIEEGYARAFTTILDANITTLIVAVILFAAGTGSVQGFAVTLFIGILTSMFTAIIGTRAMAEMIYGRGARAPSKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-126 | 51 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-126 | 51 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-126 | 51 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-125 | 51 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 8e-126 | 51 |
