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Name : ccmF (ABO_0836) Accession : YP_692556.1 Strain : Alcanivorax borkumensis SK2 Genome accession: NC_008260 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 929908 - 931878 bp Length : 1971 bp Strand : + Note : identified by match to TIGR protein family HMMTIGR00353 InterPro: Cytochrome c-type biogenesis protein (CcmF); High confidence in function and specificity DNA sequence : GTGGCGGCAGAAATCGGGCATCTCTCTCTGTGGTTGGCACTGGCCGCAGCATTGTGTCTATCAGTGTTTCCGCTGATTGG CGTTTATCGCAACATGCCCGCTTGGCAGTGGTACGCTCGACCGTTGGCCTGGATCCAATGGTTGGCAATGACCATCGCCA TGGTGGCGTTAGGCTATTGCTTCTACATCAATGATTTCTCGGTGACCTATGTGGCTGGCCACAGTAACTCGGCATTGCCG CTGGCGTACCGGTTGTCCGCCATTTGGGGCGGCCATGAAGGGTCCCTGTTGTTGTGGGGCTGGATGCTGTCCGGGTGGGC CGCCATGGTCGGGCTGCTGAGTCGCAGTGTGCCGTTGCCCATGGTGAGCCGGGTATTGTCTGTCATGGGCATGATTGCCG TGGGCTTTATGTTGTTCATGCTACTTACGTCCAATCCTTTCGATCGAAACCTGCCCTGGTTTCCGCTGGACGGTGCTGAC CTGAACCCGCTGTTACAGGATCCGGGGCTGATCATTCACCCGCCGATGCTTTATATGGGCTACGTGGGCTTTGCGGTGGC GTTTGCATTTGCCGTGGCGGGGTTGCTGATGGGCAACCTGGATCCTGCCTGGGCCCGCTGGGCGCGGCCGTGGACCACGG TAGCGTGGAGCTTCCTAACGGTGGGCATCGCGCTGGGCTCCTGGTGGGCCTATTACGAGTTGGGCTGGGGCGGCTGGTGG TTCTGGGACCCGGTGGAAAACGCTTCCTTGCTGCCGTGGTTAGCCGGGACCGCGCTCATTCACTCTTTAGCGGTGAGTGA GAAACGCAATATGTTCCGTGCCTGGACAGTGTTGCTGGCGATCATTACGTTTTCCTTGAGCCTGTTGGGTACCTTCTTGG TCCGCTCGGGGGTGCTAACGTCGGTTCATGCCTTTGCCAATGATCCGGCACGGGGGGCCTTTATCCTGGGTTTCCTTATC GTCGTCGCCGGGGGGGCGTTAACGTTGTTTAGTCTGCGTGCGTCATCGTTACGCAGCAACACCGGATTCAAACCGGTATC CCGGGAAGCTTTCCTGTTGGGTAATAACCTGATTTTGCTAACCGCCACTTCTGTGGTGTTGATGGGGACGCTATTTCCCC TGATTGGCGAAGCGCTGGACATGAAAATCTCCATCCGCAGCCCATACTTCAATGGTTTCTTTGTGCCGTTGGCGCTGGTG TTGATTCTATTGATGGTGCCGGGGGTGTTCAGTAACTGGAAACGTCAGGACGGCAATACCTTGCTTAAACGCATGGCCCT GTTGGCTCCTGCTGCGATCATTGCGGGATGGTTCGGCTCTCGATTGCCCGATCCAAGCCCCTGGCAGGGCGTTTTGGCCA TCATGCTGGCTTTGTTCCTGGTTTTTGCTCATATAGATGATGTAATCCGCCGGGCTAGCGCTTACAAGCAAGGTTTCGTT ACGGGTTTGGGTAAGCTGGGGCGCGGTTACTGGGGCATGGTGTTCGCTCATTGTGGTTTGGCGGTGTTGATCGCCGGTAT TACATTGGTGAGCTTCCATGAGGTGGAGCGGGACATTCGTATGGGGCCGGGCGATACGGCTGAACTGGGCCATTACACCT TTGTGTTCGACAGCTTGGATAAATACAGCGGGCCCAACTTTGACGCTACCCGCGGCCATTTTCATGTCAGCCATGACGGG GACCCGGTGGCGGTGATGCACCCGGAAAAACGGACTTATCACGCCAGTGGCCAGGTAATGACAGAAGCGGCGATTGATGC TGGTTTCTGGCGCGACCTCTATGTGGCGCTAGGTGAGCCCTTGGATAACAGCGATGCTTGGGCTGTGCGTATTTATTTCA AACCAGGCATTCGGTGGATCTGGCTGGGGGCATTGATTATGGCCCTTGGCGGCGCGCTGGCATTGACGGACAAACGTTAT CGGCGCAACCGTTTTGCCACCAATGACGCAGGAGTGGCCAATGAAAGCTAA Protein sequence : MAAEIGHLSLWLALAAALCLSVFPLIGVYRNMPAWQWYARPLAWIQWLAMTIAMVALGYCFYINDFSVTYVAGHSNSALP LAYRLSAIWGGHEGSLLLWGWMLSGWAAMVGLLSRSVPLPMVSRVLSVMGMIAVGFMLFMLLTSNPFDRNLPWFPLDGAD LNPLLQDPGLIIHPPMLYMGYVGFAVAFAFAVAGLLMGNLDPAWARWARPWTTVAWSFLTVGIALGSWWAYYELGWGGWW FWDPVENASLLPWLAGTALIHSLAVSEKRNMFRAWTVLLAIITFSLSLLGTFLVRSGVLTSVHAFANDPARGAFILGFLI VVAGGALTLFSLRASSLRSNTGFKPVSREAFLLGNNLILLTATSVVLMGTLFPLIGEALDMKISIRSPYFNGFFVPLALV LILLMVPGVFSNWKRQDGNTLLKRMALLAPAAIIAGWFGSRLPDPSPWQGVLAIMLALFLVFAHIDDVIRRASAYKQGFV TGLGKLGRGYWGMVFAHCGLAVLIAGITLVSFHEVERDIRMGPGDTAELGHYTFVFDSLDKYSGPNFDATRGHFHVSHDG DPVAVMHPEKRTYHASGQVMTEAAIDAGFWRDLYVALGEPLDNSDAWAVRIYFKPGIRWIWLGALIMALGGALALTDKRY RRNRFATNDAGVANES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 9e-118 | 53 |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 1e-118 | 52 |
