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Name : secD (HS_1313) Accession : YP_719525.1 Strain : Haemophilus somnus 129PT Genome accession: NC_008309 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1503374 - 1505224 bp Length : 1851 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGTTAAATCGTTACCCTTTATGGAAGAATCTAATGGTGATCCTAGTGATCGCCATTGGTGTTTTATATTCTCTTCCAAA TCTTTACGGTGAAGATCCAGCTGTACAAATCTCTGGAACACGAGGGCAAACCGCTGATATAAACGTGCTTACTAATGTAC AAACATTATTAGAGCAAAATAATTTACCTATCAAATCAATTATTTTGGAAAACGGCTCAATTTTAGCTCGTTTCAACAAT ACAGATGATCAACTTTTAGCTAAAGATAAAATTATTGAACAACTTGGTAATAATTATTCCGTTGCACTTAACCTTGCACC CGCCACACCAAAATGGTTAACCAATATTGGTGGTAGACCGATGAAATGGGGGTTAGACCTACGGGGAGGTGTTCGTTTCT TAATGGAAGTGGATATGCACACTGCATTGGATAAACGCCAAGAACAATTACAAGACAGCTTACGTACCGAATTACGCAAA GAAAAATATCAATATACGTCTATTCGTAATGGAGAAAATTTTACAACTCTCATTACCTTAGCTAAACCGGAACAACTTTC CGATGTACAACGTTTCTTGCGTAAACAACATCAAAATCTGAACGTTAATGCCATTTCTGAAAACACACTAAGTTTAGAAT TATCAGAGAACGCTCTAAGAGAAATTCGTGATCATGCTATTGAACAAAACTTAAGTATTTTACGTCGTCGTGTAGAAGAA TTGGGTGTTGCTGAACCTGTTATTCAGCGTCAAGGGGCTGAGCGTATTGTAGTGGAATTACCCGGTGTACAGGATACAGC TCGGGCAAAAGAAATTCTAGGTGCAACAGCAACGCTGGAATTCCGTTTAGTAAATCAAAATGCAAATTTAGATGTCGCTC TTAGAGGTATGGTGCCTTCTGATTCGGAAGTGAAATATGATCGCAATGGTAGTCCTATTGTGTTATATCGACGAGCTGTA TTAGGCGGTGAGCATATTACTAATGCAAGTTCAGGCATAGATCAAAATACCGGTTCTCCTCAGGTTTCGGTTACTTTAGA TTCTGAAGGTGGTGAAATTATGTCACAAACTACCAAACTTAATCTAAAGAAACCAATGGCAACTTTATATGTAGAATATA AAGACAGTGGTAAAAAAGACGAACATGGTAAAACTATTTTAGCTAAACATGAAGAAGTTATTAATGTTGCGACAATCCAA GGTCGTTTCGGTTCACAATTCCAAATTACCGGCATCAATAGCCCTGCTGAAGCACAAAACCTAGCGGTATTACTACGTTC AGGTGCTTTAACTGCACCAATTCAAATTATTGAAGAGAGAACGGTAGGCCCATCTTTGGGGGCTCAAAACGTTGAACAAG GGCTGAAAGCAGGATTATGGGGATTAGCCATTACGATTATATTTATTCTATTTTACTATAAACTCTTCGGTTTATTTGCC AGCATAGCCCTTATTGCTAATATGGTACTTCTTGTAGGCATAATGTCTTTATTACCTGGAGCGACTTTAACAATGCCGGG TATCGCAGGGATTGTTTTATCTGTCGGTATGTCTGTTGATGCTAATGTATTGATTTTTGAACGAATAAAAGAAGAAATTA ATAATGGTCGCACAATTCAGCAAGCTATTAATGAAGGTTATAGCGGTGCATTTACGAGTATTTTTGATGCGAACTTAACC ACTATTCTAACATCAGTCGTATTATATGCTGTAGGTACTGGACCGGTTAAAGGGTTTGCTATTACACTCTCTTTAGGTGT AGCGATTTCAATGTTTACTGCCATTACAGGAACTCGTTTTCTTGTAAACTTAATCTATGGTGGAAAACGTGTTGAAAAAT TATCAATTTAA Protein sequence : MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRGQTADINVLTNVQTLLEQNNLPIKSIILENGSILARFNN TDDQLLAKDKIIEQLGNNYSVALNLAPATPKWLTNIGGRPMKWGLDLRGGVRFLMEVDMHTALDKRQEQLQDSLRTELRK EKYQYTSIRNGENFTTLITLAKPEQLSDVQRFLRKQHQNLNVNAISENTLSLELSENALREIRDHAIEQNLSILRRRVEE LGVAEPVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNQNANLDVALRGMVPSDSEVKYDRNGSPIVLYRRAV LGGEHITNASSGIDQNTGSPQVSVTLDSEGGEIMSQTTKLNLKKPMATLYVEYKDSGKKDEHGKTILAKHEEVINVATIQ GRFGSQFQITGINSPAEAQNLAVLLRSGALTAPIQIIEERTVGPSLGAQNVEQGLKAGLWGLAITIIFILFYYKLFGLFA SIALIANMVLLVGIMSLLPGATLTMPGIAGIVLSVGMSVDANVLIFERIKEEINNGRTIQQAINEGYSGAFTSIFDANLT TILTSVVLYAVGTGPVKGFAITLSLGVAISMFTAITGTRFLVNLIYGGKRVEKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-124 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-124 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-123 | 47 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-124 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-124 | 47 |
